YRC Public Data Repository - Protein Structure Prediction

Protein:	idi1
Organism:	Schizosaccharomyces pombe
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for idi1.

Description	E-value	Query Range	Subject Range
gi\|6856556 - gi\|6856556\|gb\|AAF29976.1\|AF188063_1 isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase...	234.0	[0..7]	[226..35]
gi\|9971806 - gi\|9971806\|gb\|AAG10423.1\| isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase [Tagetes ...	234.0	[0..7]	[226..34]
gi\|35186998 - gi\|35186998\|gb\|AAQ84167.1\| isopentenyl pyrophosphate isomerase [Pueraria montana var. lobata]	233.0	[0..2]	[226..68]
gi\|6856550 - gi\|6856550\|gb\|AAF29973.1\|AF188060_1 isopentenyl pyrophosphate:dimethyllallyl pyrophosphate isomerase...	233.0	[0..2]	[226..62]
gi\|13603406 - gi\|13603406\|dbj\|BAB40973.1\| isopentenyl diphosphate isomerase 1 [Nicotiana tabacum]	232.0	[0..1]	[226..56]
IDI1_MESAU - Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1	232.0	[0..2]	[226..1]
IDI1_MOUSE - Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=1 SV=1	232.0	[0..2]	[226..1]
IDI1_ARATH - Isopentenyl-diphosphate Delta-isomerase I, chloroplastic OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=3	232.0	[0..2]	[226..59]
gi\|29468178 - gi\|29468178\|gb\|AAO85433.1\|AF479816_1 isopentenyl diphosphate isomerase [Aspergillus nidulans] gi\|40747522, gi\|... - gi\|67516595\|ref\|XP_658183.1\| hypothetical protein AN0579.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	231.0	[0..7]	[226..45]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQQEKKDY DEEQLRLMEE VCIVVDENDV PLRYGTKKEC HLMENINKGL LHRAFSMFIF  60
   61 DEQNRLLLQQ RAEEKITFPS LWTNTCCSHP LDVAGERGNT LPEAVEGVKN AAQRKLFHEL 120
  121 GIQAKYIPKD KFQFLTRIHY LAPSTGAWGE HEIDYILFFK GKVELDINPN EVQAYKYVTM 180
  181 EELKEMFSDP QYGFTPWFKL ICEHFMFKWW QDVDHASKFQ DTLIHRC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.0
Match:	2icjA
Description:	No description for 2icjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits