YRC Public Data Repository - Protein Structure Prediction

Protein:	idh2
Organism:	Schizosaccharomyces pombe
Length:	378 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for idh2.

Description	E-value	Query Range	Subject Range
gi\|32415850, gi\|... - gi\|32415850\|ref\|XP_328403.1\| hypothetical protein [Neurospora crassa], gi\|28923885\|gb\|EAA33047.1\| is... gi\|85106968 - gi\|85106968\|ref\|XP_962283.1\| isocitrate dehydrogenase subunit 2, mitochondrial precursor [Neurospora...	453.0	[0..1]	[377..1]
gi\|49086142, gi\|... - gi\|67517573\|ref\|XP_658607.1\| hypothetical protein AN1003.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	449.0	[0..1]	[377..1]
gi\|114197413, gi... - gi\|115491851\|ref\|XP_001210553.1\| isocitrate dehydrogenase subunit 2, mitochondrial precursor [Asperg...	448.0	[0..4]	[377..15]
gi\|42554294, gi\|... - gi\|46136129\|ref\|XP_389756.1\| hypothetical protein FG09580.1 [Gibberella zeae PH-1], gi\|42554294\|gb\|E...	448.0	[0..1]	[377..1]
gi\|82400648, gi\|... - gi\|82501358\|ref\|ZP_00886702.1\| isocitrate dehydrogenase [Caldicellulosiruptor saccharolyticus DSM 89...	447.0	[0..45]	[378..2]
gi\|46096958, gi\|... - gi\|71005618\|ref\|XP_757475.1\| hypothetical protein UM01328.1 [Ustilago maydis 521], ref\|XP_398943.1\| ...	447.0	[0..2]	[377..9]
gi\|159131403 - gi\|159131403\|gb\|EDP56516.1\| isocitrate dehydrogenase, NAD-dependent [Aspergillus fumigatus A1163] gi\|42820684 - gi\|42820684\|emb\|CAF31997.1\| isocitrate dehydrogenase, putative [Aspergillus fumigatus] gi\|70995790, gi\|... - gi\|70995790\|ref\|XP_752650.1\| isocitrate dehydrogenase, NAD-dependent [Aspergillus fumigatus Af293], ...	445.0	[0..4]	[377..15]
gi\|88180526, gi\|... - gi\|88180526\|gb\|EAQ87994.1\| hypothetical protein CHGG_04613 [Chaetomium globosum CBS 148.51], gi\|1161...	444.0	[0..1]	[377..1]
gi\|116129520, gi... - gi\|118782336\|ref\|XP_312198.3\| ENSANGP00000010852 [Anopheles gambiae str. PEST], gi\|116129520\|gb\|EAA0...	443.0	[0..26]	[378..6]
gi\|38110325, gi\|... - gi\|39952139\|ref\|XP_363786.1\| hypothetical protein MG01712.4 [Magnaporthe grisea 70-15], gb\|EAA56061....	443.0	[0..23]	[377..30]

Back

Predicted Domain #1

Region A:
Residues: [1-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMLSTLRTA GSLRTFSRSA CYSFRFSSTK AAAGTYEGVK NANGNYTVTM IAGDGIGPEI  60
   61 AQSVERIFKA AKVPIEWERV KVYPILKNGT TTIPDDAKES VRKNKVALKG PLATPIGKGH 120
  121 VSMNLTLRRT FGLFANVRPC VSITGYKTPY DNVNTVLIRE NTEGEYSGIE HEVIPGVVQS 180
  181 IKLITRAASE RVIRYAFQYA RQTGKNNITV VHKATIMRMA DGLFLECAKE LAPEYPDIEL 240
  241 REEILDNACL KIVTDPVPYN NTVMVMPNLY GDIVSDMCAG LIGGLGLTPS GNIGNQASIF 300
  301 EAVHGTAPDI AGKGLANPTA LLLSSVMMLK HMNLNDYAKR IESAIFDTLA NNPDARTKDL 360
  361 GGKSNNVQYT DAIISKLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	2d1cA
Description:	No description for 2d1cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits