YRC Public Data Repository - Protein Structure Prediction

Protein:	idh1
Organism:	Schizosaccharomyces pombe
Length:	356 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for idh1.

Description	E-value	Query Range	Subject Range
gi\|83767109 - gi\|83767109\|dbj\|BAE57248.1\| unnamed protein product [Aspergillus oryzae] gi\|169769561 - gi\|169769561\|ref\|XP_001819250.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238488122, gi... - gi\|238488122\|ref\|XP_002375299.1\| NAD(+)-isocitrate dehydrogenase subunit I [Aspergillus flavus NRRL3...	436.0	[0..3]	[355..31]
gi\|225554374 - gi\|225554374\|gb\|EEH02673.1\| isocitrate dehydrogenase [Ajellomyces capsulatus G186AR] IDH1_AJECA - Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Ajellomyces capsulatus GN=IDH1 PE=2 SV=1	435.0	[0..3]	[355..33]
gi\|90302153, gi\|... - gi\|90302153\|gb\|EAS31784.1\| isocitrate dehydrogenase subunit 1, mitochondrial precursor [Coccidioides...	433.0	[0..5]	[355..49]
gi\|115400882, gi... - gi\|115400882\|ref\|XP_001216029.1\| isocitrate dehydrogenase subunit 1, mitochondrial precursor [Asperg...	432.0	[0..3]	[355..30]
gi\|40743693, gi\|... - gi\|67539240\|ref\|XP_663394.1\| IDH1_AJECA Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial prec...	432.0	[0..3]	[355..31]
gi\|82400648, gi\|... - gi\|82501358\|ref\|ZP_00886702.1\| isocitrate dehydrogenase [Caldicellulosiruptor saccharolyticus DSM 89...	432.0	[0..20]	[356..2]
gi\|98660247, gi\|... - gi\|98660247\|dbj\|GAA02422.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476788...	430.0	[0..21]	[353..3]
gi\|46122711, gi\|... - gi\|46122711\|ref\|XP_385909.1\| IDH1_AJECA Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial prec...	428.0	[0..1]	[356..23]
gi\|125569901, gi... - gi\|81686717\|dbj\|BAE48299.1\| NAD-dependent isocitrate dehydrogenase a [Oryza sativa Japonica Group], ...	426.0	[0..7]	[353..18]
gi\|7378609, gi\|9... - gi\|9757780\|dbj\|BAB08389.1\| 3-isopropylmalate dehydrogenase [Arabidopsis thaliana], gi\|7378609\|emb\|CA...	424.0	[0..22]	[353..43]

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Predicted Domain #1

Region A:
Residues: [1-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKSLVRKSS AFQPLKYGGK YTVTLIPGDG IGRETSNAVT EIFKTANVPI EFEEIDVTGM  60
   61 EKNNKSSGDA LHEAIQSLKR NKVGLKGILF TPFEKGGHTS FNVALRKELD IYASLVLIKN 120
  121 IPGFKTRHDN VDFAIIRENT EGEYSGLEHQ SVPGVVESLK IITEYKSKRI AQFAFDFALQ 180
  181 NGRKSVTCIH KANIMKLADG LFRRTFYDVA NGYDAITPKD LIVDNASMQA VSRPQQFDVL 240
  241 VMPNLYGSIL SNIGSALVGG PGVIPGANFG RDYALFEPGC RHVGLSITGR GEANPTAAIL 300
  301 SACLMLRHLG LKDYADLINA ATYSVIEEGK TLTKDLGGSA STGDFTHAIL ERMESL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	105.0
Match:	2d1cA
Description:	No description for 2d1cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits