YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC70.02c
Organism:	Schizosaccharomyces pombe
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC70.02c.

Description	E-value	Query Range	Subject Range
STF1_YEAST - ATPase-stabilizing factor 9 kDa, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28... gi\|190405133 - gi\|190405133\|gb\|EDV08400.1\| ATPase-stabilizing factor 9 kDa, mitochondrial precursor [Saccharomyces ... STF1 - Protein involved in regulation of the mitochondrial F1F0-ATP synthase; Stf1p and Stf2p may act as st... gi\|151941872 - gi\|151941872\|gb\|EDN60228.1\| stabilizing factor [Saccharomyces cerevisiae YJM789]	101.0	[0..10]	[87..4]
ATIF1_MOUSE, IAT... - (O35143) ATPase inhibitor, mitochondrial precursor, ATPase inhibitor, mitochondrial OS=Mus musculus ...	92.0	[0..15]	[88..21]
CCDS319.1_1 - null gi\|109000135 - gi\|109000135\|ref\|XP_001113002.1\| PREDICTED: ATPase inhibitory factor 1 [Macaca mulatta]	90.0	[0..14]	[88..20]
ATPIF1 - ATPase inhibitory factor 1 gi\|60654607, gi\|... - gi\|60654609\|gb\|AAX31869.1\| ATPase inhibitory factor 1 [synthetic construct], gi\|60654607\|gb\|AAX31868... ATIF1_PONAB - ATPase inhibitor, mitochondrial OS=Pongo abelii GN=ATPIF1 PE=3 SV=1 ATIF1_PONPY - ATPase inhibitor, mitochondrial precursor - Pongo pygmaeus (Orangutan) gi\|55586611 - gi\|55586611\|ref\|XP_513253.1\| PREDICTED: ATPase inhibitory factor 1 [Pan troglodytes]	89.0	[0..14]	[88..20]
gi\|71012538, gi\|... - gi\|71012538\|ref\|XP_758508.1\| hypothetical protein UM02361.1 [Ustilago maydis 521], ref\|XP_399976.1\| ...	88.0	[0..12]	[88..14]
gi\|6978563, gi\|2... - ref\|NP_037047.1\| ATPase inhibitor [Rattus norvegicus], gi\|204682\|gb\|AAA41360.1\| IF1 protein	88.0	[0..15]	[88..21]
gi\|73950105, gi\|... - gi\|73950105\|ref\|XP_865710.1\| PREDICTED: similar to ATPase inhibitor, mitochondrial precursor isoform...	83.0	[0..13]	[88..19]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKYCFRKPA CISYRGIRFM SKASDTDPTL ANASSAKRSA FESREKAKED FFVHQHEIEQ  60
   61 LRKLKESLKL HREELDELES RVDKKMKSNE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.09691
Match:	1gmjA
Description:	F1 ATPase inhibitor, IF1, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits