YRC Public Data Repository - Protein Structure Prediction

Protein:	hsp9
Organism:	Schizosaccharomyces pombe
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsp9.

Description	E-value	Query Range	Subject Range
orf19.10669, orf... - HSP12 CGDID:CAL0002358 Assembly 19, Contig19-20170 (5849, 6355) CDS, translated using codon table 12... gi\|46442534, gi\|... - gi\|68482620\|ref\|XP_714708.1\| hypothetical protein CaO19.10669 [Candida albicans SC5314], gi\|68470563...	87.0	[0..1]	[66..42]
gi\|1742028 - gi\|1742028\|dbj\|BAA14033.1\| Sc-Hsp12p [Saccharomyces pastorianus] HSP12 - Plasma membrane localized protein that protects membranes from desiccation; induced by heat shock, o... HSP12_YEAST - 12 kDa heat shock protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HSP12 PE=1 SV=...	87.0	[0..1]	[66..1]
gi\|1742030 - gi\|1742030\|dbj\|BAA14034.1\| Lg-Hsp12p [Saccharomyces pastorianus]	81.0	[0..1]	[66..1]
gi\|57228324, gi\|... - gi\|58269864\|ref\|XP_572088.1\| 12 kda heat shock protein (glucose and lipid-regulated protein) [Crypto...	78.0	[0..1]	[66..62]
gi\|2130204, gi\|7... - gi\|703462\|gb\|AAB53442.1\| scf1 gene product [Schizosaccharomyces pombe], gi\|2130204\|pir\|\|JC4826 heat-...	77.0	[0..1]	[60..1]
gi\|49527199, gi\|... - gi\|50290911\|ref\|XP_447888.1\| unnamed protein product [Candida glabrata], gi\|49527199\|emb\|CAG60837.1\|... gi\|49527199 - gi\|49527199\|emb\|CAG60837.1\| unnamed protein product [Candida glabrata]	74.0	[0..1]	[66..1]
gi\|2367623 - gi\|2367623\|gb\|AAB69701.1\| chaperone/heat shock protein [Emericella nidulans]	73.0	[0..1]	[65..1]
gi\|50306855, gi\|... - gi\|50306855\|ref\|XP_453403.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642537\|emb\|CAH0049... gi\|49642537 - gi\|49642537\|emb\|CAH00499.1\| KLLA0D07634p [Kluyveromyces lactis]	73.0	[0..1]	[66..1]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDPARKSFT EQGKEKMTPD SSKSTLDKAK ESITGAYDKV ASAFTSDEDK STSQEAHDKA  60
   61 QRFVDDKL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.552842
Match:	PF04119.3
Description:	No description for PF04119.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits