YRC Public Data Repository - Protein Structure Prediction

Protein:	hsp90
Organism:	Schizosaccharomyces pombe
Length:	704 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsp90.

Description	E-value	Query Range	Subject Range
gi\|114607584 - gi\|114607584\|ref\|XP_001137889.1\| PREDICTED: similar to heat shock protein 90 [Pan troglodytes]	1023.0	[0..6]	[704..316]
gi\|61656603, gi\|... - gi\|63029937\|ref\|NP_001017963.1\| heat shock protein 90kDa alpha (cytosolic), class A member 1 isoform...	980.0	[0..2]	[704..137]
gi\|74147335 - gi\|74147335\|dbj\|BAE27553.1\| unnamed protein product [Mus musculus]	955.0	[0..2]	[704..15]
HS90B_CHICK - Heat shock cognate protein HSP 90-beta OS=Gallus gallus GN=HSP90AB1 PE=2 SV=1	952.0	[0..3]	[704..11]
gi\|109071309, gi... - gi\|109071317\|ref\|XP_001099135.1\| PREDICTED: heat shock 90kDa protein 1, beta isoform 7 [Macaca mulat... ENSPTRT00000033690 - null HS90B_MACFA - Heat shock protein HSP 90-beta OS=Macaca fascicularis GN=Hsp90ab1 PE=2 SV=1 HS90B_HORSE - Heat shock protein HSP 90-beta OS=Equus caballus GN=HSP90AB1 PE=2 SV=3	946.0	[0..6]	[704..14]

Back

Predicted Domain #1

Region A:
Residues: [1-704]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNTETFKFE AEISQLMSLI INTVYSNKEI FLRELISNAS DALDKIRYQS LSDPHALDAE  60
   61 KDLFIRITPD KENKILSIRD TGIGMTKNDL INNLGVIAKS GTKQFMEAAA SGADISMIGQ 120
  121 FGVGFYSAYL VADKVQVVSK HNDDEQYIWE SSAGGSFTVT LDTDGPRLLR GTEIRLFMKE 180
  181 DQLQYLEEKT IKDTVKKHSE FISYPIQLVV TREVEKEVPE EEETEEVKNE EDDKAPKIEE 240
  241 VDDESEKKEK KTKKVKETTT ETEELNKTKP IWTRNPSEVT KEEYASFYKS LTNDWEDHLA 300
  301 VKHFSVEGQL EFRAILFVPR RAPMDLFEAK RKKNNIKLYV RRVFITDDCE ELIPEWLGFI 360
  361 KGVVDSEDLP LNLSREMLQQ NKIMKVIRKN LVRRCLDMFN EIAEDKENFK TFYDAFSKNL 420
  421 KLGIHEDAAN RPALAKLLRY NSLNSPDDLI SLEDYITKMP EHQKNIYFIT GESKQAVENS 480
  481 PFLEIFRAKK FDVLFMVDPI DEYAVTQLKE FEGKKLVNIT KDGLELEETD EEKAAREKLE 540
  541 KEYEEFAKQL KTILGDKVEK VVVSNKIVGS PCLLTTGQYG WSANMERIMK AQALRDTSMS 600
  601 AYMSSRKTFE INPKSPIIAE LKKKVEENGA EDRSVKDLAT ILYETALLSS GFTLDDPSAY 660
  661 AQRINRLISL GLSIDEEEEA PIEEISTESV AAENNAESKM EEVD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2cg9A
Description:	No description for 2cg9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits