YRC Public Data Repository - Protein Structure Prediction

Protein:	hsp16
Organism:	Schizosaccharomyces pombe
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsp16.

Description	E-value	Query Range	Subject Range
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	136.0	[0..1]	[142..247]
gi\|38639431 - gi\|38639431\|gb\|AAR25848.1\| 17.5 kDa class I heat shock protein [Carica papaya]	133.0	[0..1]	[142..1]
gi\|224545 - gi\|224545\|prf\|\|1107298A protein,small heat shock	132.0	[0..1]	[142..1]
gi\|41059801 - gi\|41059801\|gb\|AAR99375.1\| small heat shock protein [Prunus persica]	130.0	[0..6]	[142..14]
gi\|91709511, gi\|... - gi\|91775524\|ref\|YP_545280.1\| heat shock protein Hsp20 [Methylobacillus flagellatus KT], gi\|91709511\|...	129.0	[0..4]	[142..42]
gi\|53692051, gi\|... - gi\|78358451\|ref\|YP_389900.1\| small HspC2 heat shock protein [Desulfovibrio desulfuricans subsp. desu...	129.0	[0..4]	[142..42]
gi\|57282287 - gi\|57282287\|emb\|CAD32528.1\| putative heat shock protein 20 [uncultured bacterium] gi\|83583497, gi\|... - gi\|83583499\|gb\|ABC24667.1\| heat shock protein [Pseudomonas aeruginosa], gi\|83583497\|gb\|ABC24666.1\| h...	129.0	[0..4]	[142..42]
HS177_ORYSJ - 17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1 HSP22_ORYSA - 17.4 kDa class I heat shock protein 2 - Oryza sativa (Rice)	128.0	[0..1]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLQPFFGFP PTVNDLFSDF VSYSPRLNNQ IPGELSPSID VHEGKDTVSV DVELPGVKKE  60
   61 DVQVHYDSGK LTISGEVVNE RKNESTEGNQ RWSERRFGSF SRTITIPAKI DADRIEANFS 120
  121 NGLLTVTLPK VEKSQTKKQI AIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.54721252992048	bayes_pls_golite062009
protein binding	0.643437066451821	bayes_pls_golite062009
catalytic activity	0.260308151913118	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: