YRC Public Data Repository - Protein Structure Prediction

Protein:	hob3
Organism:	Schizosaccharomyces pombe
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hob3.

Description	E-value	Query Range	Subject Range
gi\|11278191, gi\|... - gi\|1749608\|dbj\|BAA13861.1\| unnamed protein product [Schizosaccharomyces pombe], gi\|11278191\|pir\|\|T43...	210.0	[0..1]	[264..7]
gi\|83764941 - gi\|83764941\|dbj\|BAE55085.1\| unnamed protein product [Aspergillus oryzae] gi\|169765231 - gi\|169765231\|ref\|XP_001817087.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238503470, gi... - gi\|238503470\|ref\|XP_002382968.1\| BAR adaptor protein RVS161, putative [Aspergillus flavus NRRL3357],...	198.0	[0..1]	[259..1]
gi\|159126229 - gi\|159126229\|gb\|EDP51345.1\| BAR adaptor protein RVS161, putative [Aspergillus fumigatus A1163] gi\|66851673, gi\|... - gi\|70998630\|ref\|XP_754037.1\| BAR adaptor protein RVS161 [Aspergillus fumigatus Af293], gi\|66851673\|g...	198.0	[0..1]	[259..1]
gi\|38108766, gi\|... - gi\|39941234\|ref\|XP_360154.1\| hypothetical protein MG05528.4 [Magnaporthe grisea 70-15], gb\|EAA54737....	198.0	[0..3]	[259..15]
gi\|90301105, gi\|... - gi\|90301105\|gb\|EAS30736.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119182361\|re...	197.0	[0..1]	[259..1]
gi\|115438414, gi... - gi\|115438414\|ref\|XP_001218060.1\| reduced viability upon starvation protein 161 [Aspergillus terreus ...	196.0	[0..1]	[259..1]
gi\|49130377, gi\|... - gi\|67903688\|ref\|XP_682100.1\| hypothetical protein AN8831.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	196.0	[0..4]	[259..15]
gi\|85104154 - gi\|85104154\|ref\|XP_961681.1\| Amphiphysin-like, reduced viability upon starvation protein 161 rvs161p... gi\|32412164, gi\|... - gi\|32412164\|ref\|XP_326562.1\| hypothetical protein [Neurospora crassa], gi\|28923229\|gb\|EAA32445.1\| Am...	195.0	[0..5]	[259..67]
gi\|116198637, gi... - gi\|88178753\|gb\|EAQ86221.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11619...	195.0	[0..5]	[259..25]
gi\|46110421, gi\|... - gi\|46110421\|ref\|XP_382268.1\| hypothetical protein FG02092.1 [Gibberella zeae PH-1], gi\|42546880\|gb\|E...	191.0	[0..1]	[259..1]

Back

Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWHGFKKAV NRAGTSVMMK TGHVERTVDR EFETEERRYR TMESAAKKLQ KEAKGYLDAL  60
   61 RAMTASQTRI ANTIDAFYGD AGSKDGVSAY YRQVVEDLDA DTVKELDGPF RTTVLDPISR 120
  121 FCSYFPDINA AITKRNHKLL DHDAMRAKVQ KLVDKPSNDT TKLPRTEKEA AMAKEVYETL 180
  181 NNQLVSELPQ LIALRVPYLD PSFEALVKIQ LRFCREGYEK MAQVQQYFDN SVREDYSNGL 240
  241 LDDKVEQVLQ SMRDLSIAGL NNSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	2ficA
Description:	No description for 2ficA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits