YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1672.01
Organism:	Schizosaccharomyces pombe
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1672.01.

Description	E-value	Query Range	Subject Range
gi\|67873315, gi\|... - gi\|67873315\|ref\|ZP_00503594.1\| DNA polymerase III alpha subunit [Clostridium thermocellum ATCC 27405... gi\|196197685, gi... - gi\|196252892\|ref\|ZP_03151539.1\| DNA polymerase III, alpha subunit [Clostridium thermocellum DSM 4150...	196.0	[0..2]	[306..5]
gi\|20808235, gi\|... - gi\|20808235\|ref\|NP_623406.1\| DNA polymerase III DnaE [Thermoanaerobacter tengcongensis MB4], gi\|2051... gi\|20808235 - gi\|20808235\|ref\|NP_623406.1\| DNA polymerase III subunit alpha [Thermoanaerobacter tengcongensis MB4]	196.0	[0..1]	[306..4]
gi\|87124235, gi\|... - gi\|87124235\|ref\|ZP_01080084.1\| DNA polymerase III, alpha subunit [Synechococcus sp. RS9917], gi\|8616...	194.0	[0..2]	[303..3]
DP3A_BORBU, DPO3... - DNA polymerase III subunit alpha OS=Borrelia burgdorferi GN=dnaE PE=3 SV=2, (O51526) DNA polymerase ... DPO3A_BORBU - DNA polymerase III subunit alpha OS=Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM...	194.0	[0..2]	[306..7]
gi\|7434830 - gi\|7434830\|pir\|\|B70172 DNA polymerase III, subunit alpha (dnaE) homolog - Lyme disease spirochete gi\|15594924, gi\|... - gi\|2688500\|gb\|AAC66944.1\| DNA polymerase III, subunit alpha (dnaE) [Borrelia burgdorferi B31], gi\|15...	193.0	[0..2]	[306..21]
gi\|76588070, gi\|... - gi\|76796566\|ref\|ZP_00778925.1\| DNA polymerase III, alpha subunit [Thermoanaerobacter ethanolicus ATC... gi\|241885225, gi... - gi\|241902510\|ref\|ZP_04787244.1\| DNA polymerase III, alpha subunit [Thermoanaerobacter brockii subsp....	193.0	[0..1]	[306..1]
gi\|113882916, gi... - gi\|113955565\|ref\|YP_730835.1\| DNA polymerase III subunit alpha [Synechococcus sp. CC9311], gi\|113882...	193.0	[0..2]	[306..3]
gi\|83573620, gi\|... - gi\|83590706\|ref\|YP_430715.1\| DNA polymerase III DnaE [Moorella thermoacetica ATCC 39073], gi\|8357362...	193.0	[0..2]	[306..4]
gi\|114845143, gi... - gi\|167039837\|ref\|YP_001662822.1\| DNA polymerase III DnaE [Thermoanaerobacter sp. X514], gi\|166854077...	193.0	[0..1]	[306..1]
gi\|88925146, gi\|... - gi\|88945273\|ref\|ZP_01148487.1\| DNA polymerase III, alpha subunit [Desulfotomaculum reducens MI-1], g...	192.0	[0..2]	[306..12]

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Predicted Domain #1

Region A:
Residues: [1-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPISSHSHSG QFCLHAQGKL EDVIQEAIQQ GFQSFSFTEH TPRDRVEDLY PEELHLQPED  60
   61 LFKTFDEYVN EARRLKQNYG DQINILIGAE TEYIRPESVE LLKSLNTKYN LDYFVGSVHH 120
  121 VNSIPIDFSP ELWQKALQHV GNNPEQLFID YFEHQYDLMQ RLHPLVIGHF DLICLFAPED 180
  181 AKEVFKNSKS VWELIQRNIK YAVSYGGIFE INTSAFRKGW KTAYPQQRLL ELMVEQGAQL 240
  241 TLSDDSHGPH QVGLNYHLAK SYLDKCGITS LCMIEKGPDG NGTVVKNVTV DNVWSKFVGT 300
  301 NGITNT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	2hpiA
Description:	No description for 2hpiA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits