YRC Public Data Repository - Protein Structure Prediction

Protein:	pgr1
Organism:	Schizosaccharomyces pombe
Length:	464 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pgr1.

Description	E-value	Query Range	Subject Range
gi\|38105561, gi\|... - gi\|39942982\|ref\|XP_361028.1\| hypothetical protein MG03571.4 [Magnaporthe grisea 70-15], gb\|EAA51976....	373.0	[0..5]	[463..813]
gi\|50287255, gi\|... - gi\|50287255\|ref\|XP_446057.1\| unnamed protein product [Candida glabrata], gi\|49525364\|emb\|CAG58981.1\|... gi\|49525364 - gi\|49525364\|emb\|CAG58981.1\| unnamed protein product [Candida glabrata]	369.0	[0..2]	[463..17]
gi\|71062053, gi\|... - gi\|71082940\|ref\|YP_265659.1\| dihydrolipoyl dehydrogenase [Candidatus Pelagibacter ubique HTCC1062], ...	367.0	[0..4]	[463..1]
gi\|91762636, gi\|... - gi\|91762636\|ref\|ZP_01264601.1\| Dihydrolipoyl dehydrogenase [Candidatus Pelagibacter ubique HTCC1002]...	366.0	[0..4]	[463..1]
gi\|85092766 - gi\|85092766\|ref\|XP_959535.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28920974, gi\|... - gi\|32421479\|ref\|XP_331183.1\| hypothetical protein [Neurospora crassa], gi\|28920974\|gb\|EAA30299.1\| hy...	365.0	[0..6]	[463..62]
gi\|83774859 - gi\|83774859\|dbj\|BAE64982.1\| unnamed protein product [Aspergillus oryzae] gi\|220696267, gi... - gi\|238493073\|ref\|XP_002377773.1\| dihydrolipoamide dehydrogenase [Aspergillus flavus NRRL3357], gi\|22... gi\|169783306 - gi\|169783306\|ref\|XP_001826115.1\| hypothetical protein [Aspergillus oryzae RIB40]	365.0	[0..2]	[463..42]
DLDH_SCHPO - Dihydrolipoyl dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN... dld1 - dihydrolipoamide dehydrogenase Dld1	365.0	[0..7]	[463..45]
gi\|49648954, gi\|... - gi\|50551225\|ref\|XP_503086.1\| YALI0D20768p [Yarrowia lipolytica], gi\|49648954\|emb\|CAG81278.1\| unnamed... gi\|49648954 - gi\|49648954\|emb\|CAG81278.1\| YALI0D20768p [Yarrowia lipolytica]	363.0	[0..2]	[463..29]
gi\|114191766, gi... - gi\|115398588\|ref\|XP_001214883.1\| dihydrolipoyl dehydrogenase, mitochondrial precursor [Aspergillus t...	363.0	[0..2]	[463..45]
gi\|70988990, gi\|... - gi\|70988990\|ref\|XP_749345.1\| dihydrolipoamide dehydrogenase [Aspergillus fumigatus Af293], gi\|668469... gi\|159128758 - gi\|159128758\|gb\|EDP53872.1\| dihydrolipoamide dehydrogenase [Aspergillus fumigatus A1163]	363.0	[0..7]	[463..48]

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Predicted Domain #1

Region A:
Residues: [1-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPISKVFDY LVIGGGSGGL ASARRAAKHG AKVALIEASG RLGGTCVNYG CVPKKIMWNI  60
   61 ADLVAKMKTA KQNGFPNSQL GSFDWGMIKR KRDAYIGRLN GIYERNVNKD GVAYISGHAS 120
  121 FVSPTEVAVD MNDGSGTQVF SAKYILIAVG GHPIWPSHIP GAEYGIDSDG FFELESQPKR 180
  181 VAIVGAGYIA VELAGVFAAL GTETHMFIRQ SKFLRKFDPI ISDGIMDHFQ HIGINVHTNS 240
  241 LEFKKVEKLP SGELCIHQQD GSTFNVDTLL WAIGRAPKIQ GLRLEKAGVK TLPNGIIIAD 300
  301 TYQRTNVPTV LSLGDVCGKL ELTPVAIAAG RRLSDRLFGG IKDAHLDYEE VPSVVFAHPE 360
  361 AGTIGLTEQE AIDKYGESQI KVYNTKFNGL NYSMVEQEDK VPTTYKLVCA GPLQKVVGLH 420
  421 LVGDFSAEIL QGFGVAIKMG ATKSDFDSCV AIHPTSAEEL VTLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.154902
Match:	2hqmA
Description:	No description for 2hqmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits