YRC Public Data Repository - Protein Structure Prediction

Protein:	gcs1
Organism:	Schizosaccharomyces pombe
Length:	669 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gcs1.

Description	E-value	Query Range	Subject Range
gi\|885591 - gi\|885591\|dbj\|BAA09527.1\| gamma-glutamyl-cysteine synthetase [Schizosaccharomyces pombe]	1140.0	[0..1]	[669..1]
gi\|1743291 - gi\|1743291\|emb\|CAA71144.1\| gamma-glutamylcysteine synthetase [Leishmania tarentolae]	869.0	[0..1]	[663..1]
gi\|71748774 - gi\|71748774\|ref\|XP_823442.1\| gamma-glutamylcysteine synthetase [Trypanosoma brucei TREU927] gi\|70833110 - gi\|70833110\|gb\|EAN78614.1\| gamma-glutamylcysteine synthetase [Trypanosoma brucei]	868.0	[0..1]	[666..1]
gi\|1439564 - gi\|1439564\|gb\|AAC47195.1\| gamma-glutamylcysteine synthetase	868.0	[0..1]	[666..1]
gi\|3747103 - gi\|3747103\|gb\|AAC80009.1\| gamma-glutamylcysteine synthetase [Trypanosoma cruzi]	853.0	[0..1]	[664..1]
gi\|70878855 - gi\|70878855\|gb\|EAN92075.1\| gamma-glutamylcysteine synthetase, putative [Trypanosoma cruzi] gi\|71650457 - gi\|71650457\|ref\|XP_813926.1\| gamma-glutamylcysteine synthetase [Trypanosoma cruzi strain CL Brener]	852.0	[0..1]	[664..1]
gi\|76649809 - gi\|76649809\|ref\|XP_881953.1\| PREDICTED: similar to Glutamate--cysteine ligase catalytic subunit (Gam...	838.0	[0..1]	[666..1]
gi\|159127252 - gi\|159127252\|gb\|EDP52367.1\| glutamate-cysteine ligase Gcs1, putative [Aspergillus fumigatus A1163] gi\|66851871, gi\|... - gi\|70999025\|ref\|XP_754234.1\| glutamate-cysteine ligase Gcs1 [Aspergillus fumigatus Af293], gi\|668518...	838.0	[0..1]	[666..1]

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Predicted Domain #1

Region A:
Residues: [1-669]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLLVLGTPL DWPESKKYCD YVRENGIMQF LHMYDTYISK KQDVLLWGDE IECIVVSMDD  60
   61 KSKKARVSLR QEDILNALGK YEETFRHVDF GPVYAALRNE TCPKKIDAIL SEVAKNPADY 120
  121 VERIGGNSNK DTIEITSSTK PHAQNAVPTF HPEYGRYMLE STPGAPYGST LKDFTFVEYN 180
  181 MRLRRKIIEN HLLPNELPLT ITNFFRLGTP GFTDPEVEAN GAISRSFFLP DDVINTHVRF 240
  241 PTLTANIRQR RGRKVAMNVP IFFDKNTIKP FHDPTVPWDR NLFPEDANAR DGAALDNHIY 300
  301 MDSMGFGMGC CCLQITFQAK SCDEARLLYD QLTPITPLML ALSAGTPAFR GYLADQDCRW 360
  361 NVIAGAVDDR TEEEMKTVPK SRYDSVDLYI SNDKRNLPEY NDVPVVINQD CYDKLIKDCI 420
  421 DERLAKHMAH IFSRDPLVIF SDSILQDNSV SNAHFENLNS TNWQSMRFKP PPPGSDIGWR 480
  481 VEFRSMEIQI TDFENAAYSI FVVMLSRAIL SFNLNLYMPI SLVDENMKAA HARDAIHRKK 540
  541 FWFRCNPFPD ASTDDESGQF RQLTIDELFN GEHRENGFPG LITIVRSYLY SCNPDAKTIC 600
  601 LIERYIRLIS QRANGQCLTA ASWIRNFITT HPSYKQDSVV NDEINYDLIR RIAKIVDGDY 660
  661 DDTLLGKCS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.64
Match:	2gwcA
Description:	No description for 2gwcA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits