YRC Public Data Repository - Protein Structure Prediction

Protein:	mge1
Organism:	Schizosaccharomyces pombe
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mge1.

Description	E-value	Query Range	Subject Range
GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii GN=mge1 PE=3 SV=1 GRPE_ASHGO - GrpE protein homolog, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /...	173.0	[0..55]	[223..46]
gi\|83632128, gi\|... - gi\|83644085\|ref\|YP_432520.1\| molecular chaperone GrpE (heat shock protein) [Hahella chejuensis KCTC ...	166.0	[0..22]	[221..93]
gi\|15240475, gi\|... - gi\|9758117\|dbj\|BAB08589.1\| chaperone GrpE-like protein [Arabidopsis thaliana], gi\|20148445\|gb\|AAM101...	166.0	[0..4]	[218..67]
gi\|20151765 - gi\|20151765\|gb\|AAM11242.1\| RE56495p [Drosophila melanogaster]	166.0	[0..2]	[220..7]
GRPE_KLULA - GrpE protein homolog, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799... GRPE_KLULA - GrpE protein homolog, mitochondrial OS=Kluyveromyces lactis GN=mge1 PE=3 SV=1	165.0	[0..31]	[223..53]
GRPE_SINMW - Protein GrpE OS=Sinorhizobium medicae (strain WSM419) GN=grpE PE=3 SV=1	164.0	[0..30]	[221..4]
gi\|78389205, gi\|... - gi\|78493664\|ref\|ZP_00845896.1\| GrpE protein [Rhodopseudomonas palustris BisB18], gi\|78389205\|gb\|EAP1...	164.0	[0..68]	[221..86]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGLGRVFSS AVRPRTLIRA PINKRSFLWY STEAAKEEKP AEEKVAETEN VDVKELQSKL  60
   61 SELKSKYEAK DKEVAELKGS IRQSLADYRN LENRMKRDME QTRAFAVQKL TKDLLDSVDN 120
  121 LERALSIVPE EKRNNRESNK DLVDLYEGLA MTESNLMKTL GKYGLVRYDG IGEDFDPNIH 180
  181 EAVFQIPVEG KKPNTVFHCE SKGFQLNGRV IRPAKVGVVK GDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1dkgA
Description:	Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits