YRC Public Data Repository - Protein Structure Prediction

Protein:	gpx1
Organism:	Schizosaccharomyces pombe
Length:	158 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpx1.

Description	E-value	Query Range	Subject Range
RPA3627 - RPA3627 putative glutathione peroxidase 4089161:4089637 reverse MW:17177	167.0	[0..1]	[158..1]
gi\|67097789, gi\|... - gi\|67668648\|ref\|ZP_00465734.1\| Glutathione peroxidase [Burkholderia cenocepacia HI2424], gi\|67097789... gi\|74021136, gi\|... - gi\|89899296\|ref\|YP_521767.1\| glutathione peroxidase [Rhodoferax ferrireducens T118], gi\|89344033\|gb\|...	165.0	[0..1]	[158..1]
gi\|46319251, gi\|... - gi\|67549094\|ref\|ZP_00426968.1\| Glutathione peroxidase [Burkholderia vietnamiensis G4], gi\|67529600\|g...	165.0	[0..1]	[158..1]
gi\|91688090, gi\|... - gi\|91784136\|ref\|YP_559342.1\| glutathione peroxidase [Burkholderia xenovorans LB400], gi\|91688090\|gb\|...	164.0	[0..1]	[158..1]
gi\|2982362 - gi\|2982362\|gb\|AAC78466.1\| glutathione peroxidase [Zantedeschia aethiopica]	163.0	[0..3]	[157..86]
gi\|90107163, gi\|... - gi\|90425149\|ref\|YP_533519.1\| glutathione peroxidase [Rhodopseudomonas palustris BisB18], gi\|90107163...	163.0	[0..1]	[158..1]
gi\|167619571 - gi\|167619571\|ref\|ZP_02388202.1\| glutathione peroxidase [Burkholderia thailandensis Bt4] gi\|83720692, gi\|... - gi\|83720692\|ref\|YP_442535.1\| glutathione peroxidase [Burkholderia thailandensis E264], gi\|83654517\|g...	163.0	[0..1]	[158..1]
gi\|90331313, gi\|... - gi\|90416966\|ref\|ZP_01224895.1\| glutathione peroxidase [marine gamma proteobacterium HTCC2207], gi\|90... gi\|90416966\|ref\|... - glutathione peroxidase [marine gamma proteobacterium HTCC2207]	163.0	[0..3]	[158..6]
gi\|77655325, gi\|... - gi\|91977935\|ref\|YP_570594.1\| glutathione peroxidase [Rhodopseudomonas palustris BisB5], gi\|91684391\|...	163.0	[0..1]	[158..1]

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Predicted Domain #1

Region A:
Residues: [1-158]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHFYDLAPK DKDGNPFPFS NLKGKVVLVV NTASKCGFTP QYKGLEALYQ KYKDRGFIIL  60
   61 GFPCNQFGNQ EPGSDEEIAQ FCQKNYGVTF PVLAKINVNG DNVDPVYQFL KSQKKQLGLE 120
  121 RIKWNFEKFL VNRQGQVIER YSSISKPEHL ENDIESVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	2p5qA
Description:	No description for 2p5qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits