YRC Public Data Repository - Protein Structure Prediction

Protein:	gpd2
Organism:	Schizosaccharomyces pombe
Length:	373 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpd2.

Description	E-value	Query Range	Subject Range
gi\|22902419 - gi\|22902419\|gb\|AAH37729.1\| Gpd1l protein [Mus musculus]	289.0	[0..8]	[373..33]
gi\|50732786 - gi\|50732786\|ref\|XP_418763.1\| PREDICTED: similar to KIAA0089 [Gallus gallus]	288.0	[0..19]	[373..2]
gi\|577307 - gi\|577307\|dbj\|BAA07648.1\| KIAA0089 [Homo sapiens]	288.0	[0..13]	[373..54]
gi\|109484025, gi... - gi\|109485458\|ref\|XP_001077897.1\| PREDICTED: similar to glycerol-3-phosphate dehydrogenase 1-like [Ra...	285.0	[0..20]	[373..1]
GPDA_PONAB - Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Pongo abelii GN=GPD1 PE=2 SV=3 GPDA_PONPY - Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic - Pongo pygmaeus (Orangutan)	284.0	[0..25]	[373..4]

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Predicted Domain #1

Region A:
Residues: [1-373]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVAALNKLS ALSGSIQKSF SPKLISVGII GSGNWGTAIA KICGENAKAH PDIFHPQVHM  60
   61 WMYEEKIQHE GKECNLTEVF NTTHENVKYL KGIKCPSNVF ANPDIRDVGS RSDILVWVLP 120
  121 HQFVVRICNQ LKGCLKKDAV AISCIKGVSV TKDRVRLFSD IIEENTGMYC GVLSGANIAS 180
  181 EVAQEKFCET TIGYLPNSSV NPRYTPKTIQ ALFNRPYFRV NIVEDVPGVA LGGALKNIVA 240
  241 VAAGIIDGLE LGDNTKSAVM RIGLLEMQKF GRMFFDCKPL TMSEESCGIA DLITTCLGGR 300
  301 NHKCAVAFVK TGKPMHVVEQ ELLDGQKLQG AATAKEVYEF LDNQNKVSEF PLFTAVYRIV 360
  361 YEGLPPNKLL EAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.0
Match:	1x0vA
Description:	No description for 1x0vA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits