YRC Public Data Repository - Protein Structure Prediction

Protein:	gpd1
Organism:	Schizosaccharomyces pombe
Length:	385 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gpd1.

Description	E-value	Query Range	Subject Range
gi\|1586814 - gi\|1586814\|prf\|\|2204382A glycerol-3-phosphate dehydrogenase	294.0	[0..1]	[385..1]
gi\|577307 - gi\|577307\|dbj\|BAA07648.1\| KIAA0089 [Homo sapiens]	287.0	[0..6]	[375..49]
gi\|109052759 - gi\|109052759\|ref\|XP_001096149.1\| PREDICTED: similar to glycerol-3-phosphate dehydrogenase 1-like [Ma...	287.0	[0..2]	[375..21]
gi\|50732786 - gi\|50732786\|ref\|XP_418763.1\| PREDICTED: similar to KIAA0089 [Gallus gallus]	283.0	[0..16]	[375..1]
GPDA_RAT - Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Rattus norvegicus GN=Gpd1 PE=1 SV=4	283.0	[0..23]	[376..4]
GPDA_PONAB - Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic OS=Pongo abelii GN=GPD1 PE=2 SV=3 GPDA_PONPY - Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic - Pongo pygmaeus (Orangutan)	282.0	[0..23]	[376..4]

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Predicted Domain #1

Region A:
Residues: [1-385]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGYGQQGVS AANIDSIRPK KRLSIGVVGS GNWGTAIAKI CGENARAHGH HFRSKVRMWV  60
   61 FEEEIEYKGE KRKLTEVFNE AHENVKYLPG IECPPNVIAV PDVREVARRA DILVFVVPHQ 120
  121 FIERVCDQMV GLIRPGAVGI SCIKGVAVSK EGVRLYSEVI SEKLGIYCGV LSGANVANEV 180
  181 AREQFCETTI GFNPPNEVDI PREQIAAVFD RPYFSVVSVD DVAGVALGGA LKNVVAMAVG 240
  241 FADGLEWGGN TKAAIMRRGL LEMQKFATTF FDSDPRTMVE QSCGIADLVT SCLGGRNNRC 300
  301 AEAFVKTGKS LETLEKELLG GQLLQGAATS KDVHEFLLTK DMVKDFPLFT AVYNISYEDM 360
  361 DPKDLIIVLQ PLKEDSENEG GTETE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.30103
Match:	1wpqA
Description:	No description for 1wpqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits