YRC Public Data Repository - Protein Structure Prediction

Protein:	gms1
Organism:	Schizosaccharomyces pombe
Length:	353 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gms1.

Description	E-value	Query Range	Subject Range
gi\|109123815 - gi\|109123815\|ref\|XP_001113968.1\| PREDICTED: similar to solute carrier family 35, member E1 [Macaca m...	143.0	[0..4]	[347..309]
gi\|2864681 - gi\|2864681\|dbj\|BAA24703.1\| UDP-galactose transporter homologue [Schizosaccharomyces pombe]	142.0	[0..40]	[353..1]
gi\|114557869 - gi\|114557869\|ref\|XP_513586.2\| PREDICTED: hypothetical protein [Pan troglodytes]	141.0	[0..5]	[335..37]
gi\|51491221 - gi\|51491221\|emb\|CAH18676.1\| hypothetical protein [Homo sapiens]	137.0	[0..5]	[335..37]
gi\|148235799, gi... - gi\|80479282\|gb\|AAI08541.1\| MGC130996 protein [Xenopus laevis], gi\|148235799\|ref\|NP_001089850.1\| hypo...	133.0	[0..14]	[327..41]
gi\|85110407 - gi\|85110407\|ref\|XP_963444.1\| hypothetical protein NCU05453 [Neurospora crassa OR74A] gi\|32409655, gi\|... - gi\|32409655\|ref\|XP_325308.1\| related to SLY41 protein [MIPS] [Neurospora crassa], gi\|28925125\|gb\|EAA...	130.0	[0..12]	[346..124]
gi\|50929827, gi\|... - gi\|50929827\|ref\|XP_474441.1\| OSJNBa0070M12.19 [Oryza sativa (japonica cultivar-group)], gi\|38345836\|... gi\|90399021, gi\|... - gi\|90399021\|emb\|CAJ86141.1\| H0701F11.7 [Oryza sativa (indica cultivar-group)], gi\|125550313\|gb\|EAY96...	130.0	[0..46]	[344..27]
gi\|111619247, gi... - gi\|111619247\|ref\|ZP_01406261.1\| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...	129.0	[0..58]	[325..431]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKGDDVKW KGIPMKYIAL VLLTVQNSAL ILTLNYSRIM PGYDDKRYFT STAVLLNELI  60
   61 KLV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [64-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VCFSVGYHQF RKNVGKEAKL RAFLPQIFGG DSWKLAIPAF LYTCQNNLQY VAAGNLTAAS  60
   61 FQVTYQLKIL TTAIFSILLL HRRLGPMKWF SLFLLTGGIA IVQLQNLNSD DQMSAGPMNP 120
  121 VTGFSAVLVA CLISGLAGVY FEKVLKDTNP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.25
Match:	2i68A
Description:	No description for 2i68A was found.

Predicted Domain #3

Region A:
Residues: [214-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLWVRNVQLS FFSLFPCLFT ILMKDYHNIA ENGFFFGYNS IVWLAILLQA GGGIIVALCV  60
   61 AFADNIMKNF STSISIIISS LASVYLMDFK ISLTFLIGVM LVIAATFLYT KPESKPSPSR 120
  121 GTYIPMTTQD AAAKDVDHKH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits