YRC Public Data Repository - Protein Structure Prediction

Protein:	gma12
Organism:	Schizosaccharomyces pombe
Length:	375 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gma12.

Description	E-value	Query Range	Subject Range
SPBC1289.13c - alpha-1,2-galactosyltransferase YBKD_SCHPO - Uncharacterized alpha-1,2-galactosyltransferase C1289.13c OS=Schizosaccharomyces pombe (strain 972 /...	436.0	[0..1]	[373..1]
gi\|46434870, gi\|... - gi\|68485512\|ref\|XP_713339.1\| hypothetical protein CaO19.5658 [Candida albicans SC5314], gi\|68485417\|... orf19.5658, orf1... - MNN10 CGDID:CAL0000673 Assembly 19, Contig19-10231 (36079, 35072) CDS, reverse complemented, transla... gi\|238881788 - gi\|238881788\|gb\|EEQ45426.1\| hypothetical protein CAWG_03752 [Candida albicans WO-1]	350.0	[0..37]	[363..7]
gi\|39975379, gi\|... - gi\|39975379\|ref\|XP_369080.1\| hypothetical protein MGG_00164 [Magnaporthe grisea 70-15], gb\|EAA48506....	331.0	[0..78]	[363..149]
gi\|207346534 - gi\|207346534\|gb\|EDZ73006.1\| YDR245Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190404806 - gi\|190404806\|gb\|EDV08073.1\| galactosyltransferase [Saccharomyces cerevisiae RM11-1a] MNN10 - Subunit of a Golgi mannosyltransferase complex also containing Anp1p, Mnn9p, Mnn11p, and Hoc1p that ... MNN10_YEAST - Probable alpha-1,6-mannosyltransferase MNN10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...	321.0	[0..84]	[361..105]
gi\|28925217, gi\|... - gi\|32413136\|ref\|XP_327048.1\| hypothetical protein [Neurospora crassa], gi\|28925217\|gb\|EAA34298.1\| co... gi\|85110589 - gi\|85110589\|ref\|XP_963534.1\| hypothetical protein NCU06762 [Neurospora crassa OR74A]	318.0	[0..48]	[356..14]
gi\|49656428, gi\|... - gi\|50424345\|ref\|XP_460759.1\| hypothetical protein DEHA0F10065g [Debaryomyces hansenii CBS767], gi\|49...	317.0	[0..40]	[362..32]
gi\|40644059 - gi\|40644059\|emb\|CAE00652.1\| golgi mannosyltransferase complex subunit [Kluyveromyces lactis]	311.0	[0..100]	[360..57]
gi\|50305863, gi\|... - gi\|50305863\|ref\|XP_452892.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642025\|emb\|CAH0174... gi\|49642025 - gi\|49642025\|emb\|CAH01743.1\| KLLA0C15477p [Kluyveromyces lactis]	310.0	[0..100]	[360..57]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFAPYLISA VVITTIILGG AWWTSAMDTK LQTKMKEIID QHTSTWTPVV SSVTSTQTDT  60
   61 LRVTISEVVS VTATLTETFT ATPTVTSVVH ALATTDPHPD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.842	d.49.1	Signal recognition particle alu RNA binding heterodimer, SRP9/14

Predicted Domain #2

Region A:
Residues: [101-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSKIVILMGS NFQNDANSPL HPFAQSIIKN RREYAERHGY KFEFLDADAY ASRVTGHLMP  60
   61 WVKVPMLQDT MKKYPDAEWI WWLDHDALVM NKDLNVVDHV LKHDRLNTIL TREAEYKSGA 120
  121 GIPADGFRTP KDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.154902
Match:	2p6wA
Description:	No description for 2p6wA was found.

Predicted Domain #3

Region A:
Residues: [234-375]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAKDVHFIIS QDFNGINAGS LFIRNSEVGR WIVDLWFEPL YLDHIQGYAE QQAFSHMVFY  60
   61 HPQVYKHVGV VPLKAINAYD FDDNIWGYDD GDLCIHFAGC NYFKNCPEKF LKYAQILSSK 120
  121 QGSDWMSAQE KDHIQNLLKP SS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.79
Match:	2p6wA
Description:	No description for 2p6wA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits