YRC Public Data Repository - Protein Structure Prediction

Protein:	gln1
Organism:	Schizosaccharomyces pombe
Length:	359 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gln1.

Description	E-value	Query Range	Subject Range
gi\|44890316, gi\|... - gi\|44890316\|gb\|AAH66735.1\| Glutamate-ammonia ligase (glutamine synthase) b [Danio rerio], gi\|3350451...	402.0	[0..1]	[359..1]
GLNA_MOUSE - Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6	398.0	[0..1]	[359..1]
gi\|20799646 - gi\|20799646\|gb\|AAM28589.1\|AF503208_1 glutamine synthetase [Oreochromis niloticus]	397.0	[0..1]	[359..1]
GLNA_CANLF - Glutamine synthetase OS=Canis lupus familiaris GN=GLUL PE=1 SV=3	397.0	[0..1]	[359..1]
GLNA_BOVIN - Glutamine synthetase OS=Bos taurus GN=GLUL PE=2 SV=4	396.0	[0..1]	[359..1]
GLNA_ACOCA - Glutamine synthetase OS=Acomys cahirinus GN=GLUL PE=2 SV=3	396.0	[0..1]	[359..1]
gi\|54696412, gi\|... - gi\|61367855\|gb\|AAX43057.1\| glutamate-ammonia ligase [synthetic construct], gi\|60825988\|gb\|AAX36742.1...	396.0	[0..5]	[359..3]
gi\|114568287, gi... - gi\|114568289\|ref\|XP_001160939.1\| PREDICTED: glutamine synthetase isoform 10 [Pan troglodytes], gi\|11... CCDS1344.1_1 - null gi\|190690585, gi... - gi\|60814242\|gb\|AAX36292.1\| glutamate-ammonia ligase [synthetic construct], gi\|190691949\|gb\|ACE87749.... gi\|109019151, gi... - gi\|109019157\|ref\|XP_001114930.1\| PREDICTED: glutamine synthetase isoform 8 [Macaca mulatta], gi\|1090... GLUL - glutamate-ammonia ligase	396.0	[0..5]	[359..3]

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Predicted Domain #1

Region A:
Residues: [1-359]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQYDVEPLL SKAAILNKYA DLPQNGKVMA EYIWIDGFNH LRSKTMTLDA KPSSIDQLRV  60
   61 WNFDGSSTGQ APGNNSDTLL KPVAMYNDPF RRGDNILVLA ACYTADGSPN GFNHRDACAK 120
  121 LLEKHADKET WFGIEQEYTM LDYYDRPFGW PKGGFPGPQG PFYCGVGTGR VFARDIVEAH 180
  181 YKACLYAGIN ISGINAEVMP SQWEYQVGPC AGIEMGDQLW MSRFLLHRIA EDFGVKISFH 240
  241 PKPILGDWNG AGCHTNVSTK DTRAEGGIKA IESYLEKFAK RHKEHIAVYG DDNDLRLTGR 300
  301 HETGSIDKFT YGVADRGASV RIPRSVAMNG CGYFEDRRPA SSIDPYLVTG IITETMFEH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	2uu7A
Description:	No description for 2uu7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits