YRC Public Data Repository - Protein Structure Prediction

Protein:	git3
Organism:	Schizosaccharomyces pombe
Length:	466 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for git3.

Description	E-value	Query Range	Subject Range
gi\|76628636 - gi\|76628636\|ref\|XP_594575.2\| PREDICTED: similar to alpha 2b adrenergic receptor [Bos taurus]	306.0	[0..34]	[446..222]
gi\|12698670, gi\|... - gi\|62702294\|gb\|AAX93218.1\| unknown [Homo sapiens], gi\|12698670\|gb\|AAK01635.1\|AF316895_1 alpha 2B adr...	304.0	[0..19]	[446..6]
ADA2B_ELEMA - Alpha-2B adrenergic receptor (Fragment) OS=Elephas maximus GN=ADRA2B PE=3 SV=1	304.0	[0..28]	[406..2]
gi\|14164938 - gi\|14164938\|gb\|AAK55308.1\|AF337543_1 alpha adrenergic receptor 2B [Taphozous sp.]	303.0	[0..28]	[406..2]
gi\|14164928 - gi\|14164928\|gb\|AAK55303.1\|AF337538_1 alpha adrenergic receptor 2B [Hipposideros commersoni]	303.0	[0..28]	[406..2]
gi\|11322249 - gi\|11322249\|emb\|CAC16689.1\| alpha adrenergic receptor 2B [Felis catus]	303.0	[0..28]	[406..2]
gi\|84993360 - gi\|84993360\|emb\|CAI70428.1\| alpha 2B adrenergic receptor [Cryptoprocta ferox]	303.0	[0..28]	[403..1]
gi\|84993374 - gi\|84993374\|emb\|CAI70435.1\| alpha 2B adrenergic receptor [Galidictis fasciata]	303.0	[0..28]	[406..2]

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Predicted Domain #1

Region A:
Residues: [1-263]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHLDYTFNV SDATSTSSII IVSRRELANL RIMVIIASAI SIVFSLIAIF WRWSRRRTIR  60
   61 EQFHIALFSV LFIRSIVQMI HPCLALSDPF FWAPKHRCFT IGFFLLVLVR MTDYWIFINI 120
  121 LHNALLVLFP HVDTERRGLY RFRHTVFTLS FVIPLTIGGL AFTNKRNTFV NLQTRCYLPY 180
  181 TPVRFMFGLN WSFDYALSIA IIALQTCMFI SIRRKIKRFK KYSHQQTNVF DTLNVIDSYP 240
  241 TAPDQVALPP FPDTNSTLTY TPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.045757
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [264-348]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSQSIYSSQS QPSPYSRPLL SSVHPNLPPG SQSTPANLNQ SGIHFEQDFR DSPNRTNGLE  60
   61 DHTSFKLSSP LTSDEDGASS VLAAY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [349-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNDMQDDPLL KQRKRILSQS KFLFAYPAIF IFMWILPQIQ IIVILAQPLH CSGSCKRFAF  60
   61 VAVFADNFVA IFIALSDFIW ICYRGYTYLK ERDSSKSYWD QIKELTLKWW RGKFGEEK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits