YRC Public Data Repository - Protein Structure Prediction

Protein:	ght3
Organism:	Schizosaccharomyces pombe
Length:	555 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ght3.

Description	E-value	Query Range	Subject Range
GHT1_SCHPO - High-affinity glucose transporter ght1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ght... ght1 - hexose transporter Ght1	269.0	[0..1]	[553..1]
gi\|49527412 - gi\|49527412\|emb\|CAG61052.1\| unnamed protein product [Candida glabrata] gi\|50291337, gi\|... - gi\|50291337\|ref\|XP_448101.1\| unnamed protein product [Candida glabrata], gi\|49527412\|emb\|CAG61052.1\|...	265.0	[0..7]	[518..120]
SNF3 - Plasma membrane low glucose sensor that regulates glucose transport; contains 12 predicted transmemb... SNF3_YEAST - High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S...	260.0	[0..11]	[538..102]
orf19.2020, orf1... - HGT6 CGDID:CAL0004351 Assembly 19, Contig19-10139 (66413, 64761) CDS, reverse complemented, translat... gi\|68472555, gi\|... - gi\|68472808\|ref\|XP_719469.1\| potential hexose transporter [Candida albicans SC5314], gi\|68472555\|ref...	257.0	[0..8]	[504..52]
KHT2_KLULC - Hexose transporter 2 OS=Kluyveromyces lactis GN=KHT2 PE=3 SV=1	255.0	[0..8]	[486..64]
gi\|115402325, gi... - gi\|115402325\|ref\|XP_001217239.1\| hypothetical protein ATEG_08653 [Aspergillus terreus NIH2624], gi\|1...	254.0	[0..5]	[480..48]
gi\|11277423, gi\|... - gi\|2407189\|gb\|AAB70519.1\| hexose transporter [Schizosaccharomyces pombe], pir\|\|T43533 hexose transpo...	252.0	[0..9]	[531..1]
gi\|111066744, gi... - gi\|169602217\|ref\|XP_001794530.1\| hypothetical protein SNOG_04104 [Phaeosphaeria nodorum SN15], gi\|11...	252.0	[0..7]	[511..19]

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Predicted Domain #1

Region A:
Residues: [1-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRFITSILV VFISMSGWLQ GADTGSISGI LGMRDFQSRF ADRYNPISNS YSYSAWRQAL  60
   61 LTGTINAGCL FGAMLSSPFT ERIGKKYSIC FFSGVYIIAE LLLVTAVPSW IQVLVGKILA 120
  121 GVGIGALSVL SPGYQSEVAP PQIRGAVVAT YQIFSTGAAL VAACINMGTH KLRKTASWRT 180
  181 SFGINMLWGI LLMVGVLFLP ESPRYLIYKG RDEEALRIMC NMAELSPESE IIQTNFNTIK 240
  241 SDIEIEMAGG KARWIEIFGK DIRYRTCLGF LVMLFRELIG NNYYFYYATQ VFKGTGMTDI 300
  301 FLPAVILGAI NFGTTFGALY TIDNLGRRNP LIFGAAFQSI CFFIYAAVGD RKLIYKNGTS 360
  361 DHRAGSVMIV FSCLFLFSYC CSWGPMGWVI VGETFPIRYR SKCASVATSG NWLGNFMISF 420
  421 FTPFINNAIG FKLGYIYACI NLFSSFMIFF LAKETKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [458-555]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTLEEVNDLY MSNIKPWESY KYVREIESHR IHFSKEEEKR EREKSKGIRG QEEEFIENAD  60
   61 EDNNDSSSSS GSVVSAVKPR RSAVSNDRFS EDSHPTYI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits