YRC Public Data Repository - Protein Structure Prediction

Protein:	gcv1
Organism:	Schizosaccharomyces pombe
Length:	387 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gcv1.

Description	E-value	Query Range	Subject Range
GCST_THETN - Aminomethyltransferase OS=Thermoanaerobacter tengcongensis GN=gcvT PE=3 SV=1 GCST_CALS4 - Aminomethyltransferase OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM... gi\|214035115, gi... - gi\|254478933\|ref\|ZP_05092294.1\| glycine cleavage system T protein [Carboxydibrachium pacificum DSM 1...	448.0	[0..17]	[377..5]
GCST_DESHD - Aminomethyltransferase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=gcvT PE=3 SV=1	433.0	[0..21]	[385..3]
GCST_DESHY - Aminomethyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=gcvT PE=3 SV=1	432.0	[0..21]	[385..3]
GCST_SOLTU - Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1	429.0	[0..12]	[387..25]
gi\|228648434, gi... - gi\|229135049\|ref\|ZP_04263854.1\| Aminomethyltransferase [Bacillus cereus BDRD-ST196], gi\|228648434\|gb... gi\|229013446, gi... - gi\|229013446\|ref\|ZP_04170583.1\| Aminomethyltransferase [Bacillus mycoides DSM 2048], gi\|228747858\|gb... GCST_BACWK - Aminomethyltransferase OS=Bacillus weihenstephanensis (strain KBAB4) GN=gcvT PE=3 SV=1	427.0	[0..22]	[382..4]
GCST_HALOH - Aminomethyltransferase OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvT PE=3 SV...	427.0	[0..22]	[381..1]
GCST_THEPX - Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=gcvT PE=3 SV=1 gi\|242256016, gi... - gi\|242256016\|ref\|ZP_04800914.1\| glycine cleavage system T protein [Thermoanaerobacter sp. X513], gi\|...	426.0	[0..20]	[376..2]
gi\|89086066, gi\|... - gi\|89099220\|ref\|ZP_01172098.1\| aminomethyltransferase [Bacillus sp. NRRL B-14911], gi\|89086066\|gb\|EA...	425.0	[0..20]	[386..2]
GCST_FLAAN - Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1	425.0	[0..13]	[387..26]
gi\|407475, gi\|541967 - pir\|\|S38370 aminomethyltransferase (EC 2.1.2.10) precursor - garden pea, gi\|407475\|emb\|CAA52800.1\| T...	425.0	[0..13]	[387..27]

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Predicted Domain #1

Region A:
Residues: [1-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRSAALSIL KRQSSTAASS SLKRTPLYDL HLKEGATIVP FAGFSMPVQY KGQTISASHK  60
   61 WTREHSGLFD VSHMVQWFVR GENATAYLES ITPSSLKELK PFHSTLSAFT NETGGIIDDT 120
  121 IISKQDENTY YIVTNAACSE KDEANLKKHI ENWKGVELER VQGRALIAIQ GPETASVVQK 180
  181 LIPNVDFSVL KFGQSAYVDF KGVKCLFSRS GYTGEDGFEV SIPEEVSVDF ASTLLADTRV 240
  241 RPIGLGARDT LRLEAGMCLY GSDIDDTTSP VEGSLSWIIG KRRRKEGGFV GSSRILKELK 300
  301 DGPSRRRVGF IVEKVPARHG SAVEVDGVEV GQVTSGCPSP TLGKNIAMGY ISTGLHQVGT 360
  361 PAHIKVRNKL HPAQVVRMPF VETHYYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	115.0
Match:	1wsrA
Description:	Crystal Structure of Human T-protein of Glycine Cleavage System
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits