YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBPB2B2.13
Organism:	Schizosaccharomyces pombe
Length:	519 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBPB2B2.13.

Description	E-value	Query Range	Subject Range
gi\|75766245, gi\|... - gi\|75766246\|pdb\|2AJ4\|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Galactokinase In Compl...	439.0	[0..4]	[516..31]
gi\|49653454 - gi\|49653454\|emb\|CAG85826.1\| DEHA2C02486p [Debaryomyces hansenii] gi\|50418543, gi\|... - gi\|50418543\|ref\|XP_457788.1\| hypothetical protein DEHA0C02860g [Debaryomyces hansenii CBS767], gi\|49...	427.0	[0..3]	[516..4]
GAL1_KLULA - Galactokinase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-... GAL1_KLULA - Galactokinase OS=Kluyveromyces lactis GN=GAL1 PE=2 SV=2	400.0	[0..3]	[515..2]
gi\|68484609, gi\|... - gi\|68484678\|ref\|XP_713730.1\| hypothetical protein CaO19.11154 [Candida albicans SC5314], gi\|68484609... orf19.3670, orf1... - GAL1 CGDID:CAL0000446 Assembly 19, Contig19-10186 (32964, 31417) CDS, reverse complemented, translat...	394.0	[0..3]	[515..2]
GAL1_CANAX - Galactokinase OS=Candida albicans GN=GAL1 PE=3 SV=1	390.0	[0..3]	[515..2]
gi\|171567\|gb\|AAA... - gal1 gi\|171567 - gi\|171567\|gb\|AAA34631.1\| gal1	389.0	[0..4]	[516..11]
GAL1_CANPA - Galactokinase OS=Candida parapsilosis GN=GAL1 PE=3 SV=1	382.0	[0..3]	[516..2]
gi\|37955148 - gi\|37955148\|gb\|AAP75565.1\| galactokinase [Hypocrea jecorina]	375.0	[0..3]	[514..4]

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Predicted Domain #1

Region A:
Residues: [1-519]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVPTYHDL SFYSNPKENK ARYAKLLNSF EQKYHCKPDF FSRSPGRVNI IGEHIDYNYF  60
   61 SVLPMAIDVD VIVSVTTSDD AKVELNNTNP EFKEEILELP SDGAVIEINK THHTWGNYFR 120
  121 CSMIVAHKYI LEKYPELVSG GKKPLKGLKL IFDGNVPTGG GLSSSAAFCV ASILAILKAN 180
  181 GINTITKEDL VKISVVSEHY VGVNTGGMDQ CASIYGEQNK ALLVQFKPKL MATPFKMPVL 240
  241 KPHDMVFLIS NTLVEANKQE TALTNYNLRV VEMAVASEFL AKKFNLELPK ESNLHTGTLR 300
  301 GFMDEYYEKH LKQPHWDGSD IDMGVQRMQE MLRLTEIMFS EEQKVGFKTE ELAKELGLSV 360
  361 EEFTKVFLTK IPVKYERMKI YQRTVHVYSD AMRVLQVLKL FHQHKDSDDP QKFMLAFGRL 420
  421 LNDSQRSEDI YNNSSSPELR EVCKISLANG GYGARTTGAG WGGSAVHLTT HDKLAKLVEA 480
  481 LTEQYYKKQF PKITQSELNA AVVVSKPAAG SCIVQLAEY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	123.0
Match:	2aj4A
Description:	Crystal structure of Saccharomyces cerevisiae Galactokinase in complex with galactose and Mg:AMPPNP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits