YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1703.08c
Organism:	Schizosaccharomyces pombe
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1703.08c.

Description	E-value	Query Range	Subject Range
gi\|254226257, gi... - gi\|75817952\|ref\|ZP_00748198.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae V51],...	213.0	[0..1]	[202..1]
gi\|126510113, gi... - gi\|153819332\|ref\|ZP_01971999.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12651... gi\|153822866, gi... - gi\|229512342\|ref\|ZP_04401821.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae B33], gi\|2293... gi\|75829168, gi\|... - gi\|75829168\|ref\|ZP_00758481.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae MO10]... gi\|227082599, gi... - gi\|227082599\|ref\|YP_002811150.1\| hypothetical protein VCM66_2401 [Vibrio cholerae M66-2], gi\|2270104... gi\|229507463, gi... - gi\|229507463\|ref\|ZP_04396968.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae BX 330286], g... gi\|229519478, gi... - gi\|229519478\|ref\|ZP_04408921.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae RC9], gi\|2293... gi\|229369623, gi... - gi\|229606968\|ref\|YP_002877616.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae MJ-1236], gi... gi\|11278428 - pir\|\|A82072 conserved hypothetical protein VC2479 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|121547403, gi... - gi\|121590762\|ref\|ZP_01678092.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215474... gi\|9657058, gi\|1... - gi\|9657058\|gb\|AAF95621.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|124118870, gi... - gi\|153222433\|ref\|ZP_01953167.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241188...	213.0	[0..1]	[202..1]
gi\|84376740, gi\|... - gi\|84390086\|ref\|ZP_00991348.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Vibrio...	212.0	[0..2]	[202..3]
gi\|27364918, gi\|... - gi\|27364918\|ref\|NP_760446.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio vulnificus CMCP6], gi\|273... gi\|37681033, gi\|... - gi\|37681033\|ref\|NP_935642.1\| 5-formyltetrahydrofolate cyclo-ligase [Vibrio vulnificus YJ016], gi\|371...	212.0	[0..2]	[202..3]
gi\|121628693, gi... - gi\|75814146\|ref\|ZP_00744780.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae V52],... gi\|146317596, gi... - gi\|75827741\|ref\|ZP_00757176.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae O395]...	212.0	[0..1]	[202..1]
gi\|86146375, gi\|... - gi\|86146375\|ref\|ZP_01064699.1\| putative 5-formyltetrahydrofolate cyclo-ligase-family protein [Vibrio...	211.0	[0..2]	[202..3]
tr\|D7HEP5\|D7HEP5... - 5-formyltetrahydrofolate cyclo-ligase OS=Vibrio cholerae RC385 GN=VCRC385_03467 PE=3 SV=1 gi\|116216720, gi... - gi\|75823519\|ref\|ZP_00753015.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio cholerae RC385...	211.0	[0..1]	[202..1]
gi\|254230209, gi... - gi\|75853743\|ref\|ZP_00761514.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Vibrio sp. Ex25], gi\|...	210.0	[0..1]	[202..1]
gi\|24372363, gi\|... - gi\|24372363\|ref\|NP_716405.1\| 5-formyltetrahydrofolate cyclo-ligase family protein [Shewanella oneide... SO0774 - 5-formyltetrahydrofolate cyclo-ligase family protein	210.0	[0..2]	[202..33]
gi\|192930785, gi... - gi\|193063508\|ref\|ZP_03044597.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli E22], gi\|... gi\|208725708, gi... - gi\|208805907\|ref\|ZP_03248244.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|189403793, gi... - gi\|189403793\|ref\|ZP_02785050.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|38704126 - gi\|38704126\|ref\|NP_311809.2\| putative ligase [Escherichia coli O157:H7] gi\|189404764, gi... - gi\|189404764\|ref\|ZP_02810768.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|209160736, gi... - gi\|209399336\|ref\|YP_002272387.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 ... gi\|217319900, gi... - gi\|217327533\|ref\|ZP_03443616.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|208735489, gi... - gi\|208814212\|ref\|ZP_03255541.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|208819943, gi... - gi\|208819943\|ref\|ZP_03260263.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|170018843, gi... - gi\|170018843\|ref\|YP_001723797.1\| putative ligase [Escherichia coli ATCC 8739], gi\|169753771\|gb\|ACA76... gi\|194424183, gi... - gi\|83587693\|ref\|ZP_00926320.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli 101-... gi\|189401951, gi... - gi\|189401951\|ref\|ZP_02778860.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|194415490, gi... - gi\|75212474\|ref\|ZP_00712498.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli B171... gi\|189402865, gi... - gi\|189402865\|ref\|ZP_02791915.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|75228579, gi\|... - gi\|75228579\|ref\|ZP_00715208.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli B7A]... gi\|188024584, gi... - gi\|188024584\|ref\|ZP_02772628.2\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|192959432, gi... - gi\|75239520\|ref\|ZP_00723491.1\| COG0212: 5-formyltetrahydrofolate cyclo-ligase [Escherichia coli E110... gi\|189010397, gi... - gi\|189010397\|ref\|ZP_03006309.1\| 5,10-methenyltetrahydrofolate synthetase [Escherichia coli O157:H7 s... gi\|38704126 - gi\|38704126\|ref\|NP_311809.2\| putative ligase [Escherichia coli O157:H7 str. Sakai] gi\|33347709\|ref\|... - putative ligase [Escherichia coli K12], putative ligase [Escherichia coli K12], 5-formyltetrahydrofo...	208.0	[0..1]	[202..9]

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Predicted Domain #1

Region A:
Residues: [1-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKKNQLRA ILNSSLGKLA DHIIDSQSIS ICKQVVELPE WKRCKNVCLY MNMPKKEVRT  60
   61 RCLIDVAFKE GKNVFIPKCI GSHVMEMYQV FEKTESLTIN KWGIAEPNGE SRKIMDDETD 120
  121 CELIIVPGVA FDEKLSRLGH GKGYYDNYIS KYQSWALQKE SRANMFKVGI CLKEQILPNR 180
  181 EIPMDTRDQK LDALVTPEKV IRNI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.0
Match:	1ydmA
Description:	X-Ray structure of Northeast Structural Genomics target SR44
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits