YRC Public Data Repository - Protein Structure Prediction

Protein:	fcp1
Organism:	Schizosaccharomyces pombe
Length:	723 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fcp1.

Description	E-value	Query Range	Subject Range
gi\|45185103, gi\|... - gi\|45185103\|ref\|NP_982820.1\| ABL127Wp [Ashbya gossypii ATCC 10895], gi\|44980739\|gb\|AAS50644.1\| ABL12... gi\|44980739 - gi\|44980739\|gb\|AAS50644.1\| ABL127Wp [Ashbya gossypii ATCC 10895]	451.0	[0..6]	[684..3]
gi\|66852115, gi\|... - gi\|70999518\|ref\|XP_754478.1\| RNA Polymerase II CTD phosphatase Fcp1 [Aspergillus fumigatus Af293], g...	449.0	[0..8]	[654..3]
gi\|46126951, gi\|... - gi\|46126951\|ref\|XP_388029.1\| hypothetical protein FG07853.1 [Gibberella zeae PH-1], gi\|42555204\|gb\|E...	448.0	[0..1]	[711..1]
gi\|67524889, gi\|... - gi\|67524889\|ref\|XP_660506.1\| hypothetical protein AN2902.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	447.0	[0..8]	[637..3]
gi\|21914376 - gi\|21914376\|gb\|AAM81360.1\|AF522873_3 RNA polymerase II C-terminal domain phosphatase component [Lept...	447.0	[0..8]	[721..3]
gi\|83767703 - gi\|83767703\|dbj\|BAE57842.1\| unnamed protein product [Aspergillus oryzae] gi\|169770749 - gi\|169770749\|ref\|XP_001819844.1\| hypothetical protein [Aspergillus oryzae RIB40]	444.0	[0..8]	[723..3]
gi\|151945985 - gi\|151945985\|gb\|EDN64217.1\| protein phosphatase [Saccharomyces cerevisiae YJM789] FCP1 - Carboxy-terminal domain (CTD) phosphatase, essential for dephosphorylation of the repeated C-termina... FCP1_YEAST - RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 2...	436.0	[0..6]	[718..3]
gi\|115396432, gi... - gi\|115396432\|ref\|XP_001213855.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	434.0	[0..8]	[720..3]
gi\|85090500 - gi\|85090500\|ref\|XP_958446.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28919810, gi\|... - gi\|32423109\|ref\|XP_331992.1\| hypothetical protein [Neurospora crassa], gi\|28919810\|gb\|EAA29210.1\| hy...	433.0	[0..8]	[615..78]
gi\|68472324, gi\|... - gi\|68472324\|ref\|XP_719723.1\| potential RNA Pol II CTD phosphatase component [Candida albicans SC5314... orf19.6742, orf1... - orf19.6742 CGDID:CAL0004856 Assembly 19, Contig19-10254 (63345, 61039) CDS, reverse complemented, tr...	424.0	[0..1]	[686..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRLTPIHL PNSLNYPIEI ASCLVPQGSY VKKGTPLLLY RFFTKVKEDQ EDGSEVYVDR  60
   61 EFVEQFECPV EGELVEWAVK KEESIENFSK IVAKLHEPCT HEVNYGGLCA ICGKNITSQD 120
  121 YMGYSDMARA NISMTHN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.58
Match:	2dneA
Description:	No description for 2dneA was found.

Predicted Domain #2

Region A:
Residues: [138-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGDLTVSLEE ASRLESENVK RLRQEKRLSL IVDLDQTIIH ATVDPTVGEW MSDPGNVNYD  60
   61 VLRDVRSFNL QEGPSGYTSC YYIKFRPGLA QFLQKISELY ELHIYTMGTK AYAKEVAKII 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	2hhlA
Description:	No description for 2hhlA was found.

Predicted Domain #3

Region A:
Residues: [258-577]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPTGKLFQDR VLSRDDSGSL AQKSLRRLFP CDTSMVVVID DRGDVWDWNP NLIKVVPYEF  60
   61 FVGIGDINSN FLAKSTPLPE QEQLIPLEIP KDEPDSVDEI NEENEETPEY DSSNSSYAQD 120
  121 SSTIPEKTLL KDTFLQNREA LEEQNKERVT ALELQKSERP LAKQQNALLE DEGKPTPSHT 180
  181 LLHNRDHELE RLEKVLKDIH AVYYEEENDI SSRSGNHKHA NVGLIIPKMK QKVLKGCRLL 240
  241 FSGVIPLGVD VLSSDIAKWA MSFGAEVVLD FSVPPTHLIA AKIRTEKVKK AVSMGNIKVV 300
  301 KLNWLTESLS QWKRLPESDY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	2owoA
Description:	No description for 2owoA was found.

Predicted Domain #4

Region A:
Residues: [578-644]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLYPSYDLPD RNLSEHSYSS SSDDEQRISE LNDRELDEID WQAADQDVEN ALKDLSDDND  60
   61 FDTGSIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.154902
Match:	1z56C
Description:	Co-Crystal Structure of Lif1p-Lig4p
Matching Structure (courtesy of the PDB):

Predicted Domain #5

Region A:
Residues: [645-723]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASQSQPEALE VNTPIKRKAD LIQPSYNYDG EKRRKENDNH EGYDLLPNSS TKGEESAENE  60
   61 NELDDLADIM EAELSKDTA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits