YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1235.04c
Organism:	Schizosaccharomyces pombe
Length:	265 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1235.04c.

Description	E-value	Query Range	Subject Range
gi\|51457940 - gi\|51457940\|gb\|AAU03359.1\| adenylyl-sulfate reductase [Lycopersicon esculentum]	218.0	[0..2]	[265..67]
gi\|18252504 - gi\|18252504\|gb\|AAL66290.1\|AF452450_1 adenosine 5'-phosphosulfate reductase [Glycine max]	215.0	[0..32]	[265..103]
gi\|12831474 - gi\|12831474\|gb\|AAB05871.2\| PAPS-reductase-like protein [Catharanthus roseus]	211.0	[0..2]	[245..66]
CYSD_PSEPF - Sulfate adenylyltransferase subunit 2 OS=Pseudomonas fluorescens (strain Pf0-1) GN=cysD PE=3 SV=1	211.0	[0..21]	[259..2]
CYSD_PSEF5 - Sulfate adenylyltransferase subunit 2 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=cys...	210.0	[0..21]	[259..2]
gi\|34099827 - gi\|34099827\|gb\|AAQ57202.1\| adenosine 5' phosphosulfate reductase [Populus alba x Populus tremula]	210.0	[0..5]	[250..67]
gi\|1399349 - gi\|1399349\|gb\|AAC49573.1\| 3'-phosphoadenosine 5'-phosphosulfate reductase	210.0	[0..1]	[265..70]

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Predicted Domain #1

Region A:
Residues: [1-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDELERVYQS IKNIFTHSAP SEKLVGLQNR LSISLRFIEY AFETYQPERL AMSFNGGKDC  60
   61 LVLFLLCIYY LKEKYKEQAQ AKLSNIPFVF VRPRDEFPEM DDFVNECQSK YRLNIIKISL 120
  121 PMKEAFCKFL KEHKHIQAIL IGIRRLDPHG LHRIAFEVTD KGWPKFMRIQ PILDWSYTEI 180
  181 WDLLLETNTK YCSLYDRGYT SLGGVSDTSP NPALKNPDGT YSPAYLLSDG SLERAGRNNT 240
  241 VPFSRTNSRF LYDSGASSYA SSEVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.39794
Match:	1zunA
Description:	Crystal Structure of a GTP-Regulated ATP Sulfurylase Heterodimer from Pseudomonas syringae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.828867994386867	bayes_pls_golite062009
ligase activity	0.703115006032769	bayes_pls_golite062009
nucleic acid binding	0.266862890679237	bayes_pls_golite062009
DNA binding	0.139880087662673	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: