YRC Public Data Repository - Protein Structure Prediction

Protein:	erd2
Organism:	Schizosaccharomyces pombe
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for erd2.

Description	E-value	Query Range	Subject Range
gi\|47214332 - gi\|47214332\|emb\|CAG00841.1\| unnamed protein product [Tetraodon nigroviridis]	365.0	[0..1]	[208..1]
gi\|76616893 - gi\|76616893\|ref\|XP_586702.2\| PREDICTED: similar to ER lumen protein retaining receptor 3 (KDEL recep...	350.0	[0..1]	[211..199]
gi\|109482565 - gi\|109482565\|ref\|XP_001076531.1\| PREDICTED: similar to ER lumen protein retaining receptor 3 (KDEL r...	341.0	[0..1]	[211..340]
gi\|27525270, gi\|... - gi\|74096067\|ref\|NP_001027671.1\| KDEL receptor [Ciona intestinalis], gi\|27525270\|emb\|CAC81951.1\| KDEL...	300.0	[0..1]	[212..1]
ERD21_XENTR - ER lumen protein-retaining receptor 1 OS=Xenopus tropicalis GN=kdelr1 PE=2 SV=1	297.0	[0..1]	[212..1]
ERD22_CHICK - ER lumen protein-retaining receptor 2 OS=Gallus gallus GN=KDELR2 PE=2 SV=1	297.0	[0..1]	[212..1]
ERD22_DANRE - ER lumen protein-retaining receptor 2 OS=Danio rerio GN=kdelr2 PE=2 SV=1	296.0	[0..1]	[212..1]

Back

Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFFSALGDM AHLAAIFLLL HRMKKSKTCS GLSLKSHLLF LLVYVTRYLN LFWRYKSLYY  60
   61 FLMRIVFIAS ESYICYLMLM TLRPTYDKRL DTFRTEYILG GCAVLALIYP TSY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [114-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TISNILWTFS IWLESVAILP QLFMLQRSGE TESLTAHYLF AMCLYRGLYI PHWIYRIAVH  60
   61 KKVIGVAILA GIIQTVLYGD FAVVYRRTVL QGKKFRLPA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits