YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: erg24
Organism: Schizosaccharomyces pombe
Length: 424 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for erg24.

Description E-value Query
Range
Subject
Range
LBR_MOUSE - Lamin-B receptor OS=Mus musculus GN=Lbr PE=1 SV=2
597.0 [0..7] [424..212]
LBR_RAT - Lamin-B receptor OS=Rattus norvegicus GN=Lbr PE=1 SV=1
588.0 [0..7] [424..206]
gi|62088608 - gi|62088608|dbj|BAD92751.1| lamin B receptor variant [Homo sapiens]
585.0 [0..9] [424..204]
LBR_PONPY - Lamin-B receptor - Pongo pygmaeus (Orangutan)
LBR_PONAB - Lamin-B receptor OS=Pongo abelii GN=LBR PE=2 SV=1
583.0 [0..9] [424..203]

Back

Predicted Domain #1
Region A:
Residues: [1-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGAVKKEK FEYEFFGPIG ALGVTVLTTV VSFGSFYICN EEGCPAKFSK ISHIFKKTPL  60
   61 FDQKSLILYL LWFSTLTLLW KCTNGKWAKG TPIDDKGTRL LYKINGFNSA CLILGVVCTS 120
  121 IYLLGASCME FIWDNFLQLM FAAYVFSVVL CTFCYVQSFF GKQQLAKGGT 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [171-279]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGNILFDWFI GRSLNPRIGN FDIKCFCELR PGLILWVVFD IAFACHQYLV LGGRITDSMV  60
   61 LVIIFHTWYV LDSLINESAV LTTMDITTDG FGYMLSFGDL VWVPFLYSL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [280-424]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QARYLAFHPV DLGLVKTLAI LCLQFLGYYI FRGANGQKNR FRSNPNDPKL KHLKFIQTKR  60
   61 GTKLLTSGWW GMARHINYFG DWIMAWAWCL PAGFGSPIPY FYVAYFGVLL VHRNARDDHK 120
  121 CRVKYGEDWE KYCKAVKYRI IPYVY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle