YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC660.10
Organism:	Schizosaccharomyces pombe
Length:	813 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC660.10.

Description	E-value	Query Range	Subject Range
EFG_GEOKA - Elongation factor G OS=Geobacillus kaustophilus GN=fusA PE=3 SV=1 EFG_GEOKA - Elongation factor G OS=Geobacillus kaustophilus (strain HTA426) GN=fusA PE=3 SV=1	669.0	[0..22]	[801..4]
EFG_MOOTA - Elongation factor G OS=Moorella thermoacetica (strain ATCC 39073) GN=fusA PE=3 SV=1	669.0	[0..22]	[801..4]
gi\|10279668 - gi\|10279668\|emb\|CAC09927.1\| translation elongation factor G, EF-G [Geobacillus stearothermophilus]	668.0	[0..22]	[801..4]
EFG1_GEOMG - Elongation factor G 1 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=fusA1 P...	667.0	[0..23]	[801..5]
EFG_BACHD - Elongation factor G OS=Bacillus halodurans GN=fusA PE=3 SV=2 EFG_BACHD - Elongation factor G OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 /...	665.0	[0..22]	[801..4]
EFG_NITEU - Elongation factor G OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=fusA PE=3 SV=1 EFG_NITEU - Elongation factor G OS=Nitrosomonas europaea GN=fusA PE=3 SV=1	665.0	[0..24]	[801..6]
gi\|116694084, gi... - gi\|116694084\|ref\|YP_728295.1\| elongation factor G [Ralstonia eutropha H16], gi\|113528583\|emb\|CAJ9493...	665.0	[0..20]	[799..1]
EFG_NITEC - Elongation factor G OS=Nitrosomonas eutropha (strain C91) GN=fusA PE=3 SV=1	663.0	[0..24]	[801..6]
gi\|254187470, gi... - gi\|254187470\|ref\|ZP_04893982.1\| translation elongation factor G [Burkholderia pseudomallei Pasteur 5... gi\|76809746, gi\|... - gi\|76809746\|ref\|YP_332517.1\| elongation factor EF-2 [Burkholderia pseudomallei 1710b], gi\|76579199\|g...	663.0	[0..24]	[803..107]
EFG_THETN - Elongation factor G OS=Thermoanaerobacter tengcongensis GN=fusA PE=3 SV=1 EFG_CALS4 - Elongation factor G OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11...	663.0	[0..22]	[798..4]

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Predicted Domain #1

Region A:
Residues: [1-813]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRIVWKPLK IRLPVWRRYQ SNISINSIRN VGIIAHIDAG KTTLTEKMLY YGGFTSHFGN  60
   61 VDTGDTVMDY LPAERQRGIT INSAAISFTW RNQRINLIDT PGHADFTFEV ERSVAVLDGA 120
  121 VAIIDGSAGV EAQTKVVWKQ ATKRGIPKVI FVNKMDRVGS SLGSTIRSIY TNLDCPYPLV 180
  181 LQLPVYSDGL QERKFLGILD ILQQKMILWD TSDNKLGTDG THVQELPIPE SHMERFIEAR 240
  241 NALVMSLCDV DETLCDEYLE NEDSLAFTND RLFKIIKQKT ISGNVVPVLC GSSLKNIAVQ 300
  301 PIMDAIIDYL PSPVEFYEKN ASKETSSDKI ISLDKRPLLA KIFKVIHHAS RGILTYVRVN 360
  361 EGTLSRGMMM FNPRTKKSER AIRLYNVFAD QTQEVDCISA GNIGVISGIK QFHTGDIIIN 420
  421 KENSKNFHEY LSGNQSVISI PEPVCIASIE PYSLKDEPAL LEALANMNRE DPSFRYTQDL 480
  481 ENGQLLIQGM GIMHLQVSYE RLVSEFGARA SLGKVQVGYR ETLIDVSFNS VTLSTENKEN 540
  541 LIINVYLIPI SDEGDETLKK YFSEGEIQKV RSKGQEDGVL FYGWKPENSC TLPDHLSFQR 600
  601 IQENIYFGIV AGLSHGPLHG FPLTNLQSFC TISSFLSNDF PLSLLTQASM KATKNAVFSL 660
  661 YKRSPKSFRI LEPYMDVTIT TPEEYVGIVS KDLVGKRGAT IKEITEIGKN AASKDSQIAI 720
  721 GILGERYLPA DEPSSVKANN ASSLLQSSSV IKCIRAQVPL EQILDYNSVI SSLTKGNAKF 780
  781 LMSHPMESQT PKLVNYGSSF HPMSMQRQKR IFP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1darA
Description:	ELONGATION FACTOR G IN COMPLEX WITH GDP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits