YRC Public Data Repository - Protein Structure Prediction

Protein:	dsd1
Organism:	Schizosaccharomyces pombe
Length:	362 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dsd1.

Description	E-value	Query Range	Subject Range
gi\|39975783, gi\|... - gi\|39975783\|ref\|XP_369282.1\| hypothetical protein MG06182.4 [Magnaporthe grisea 70-15], gb\|EAA53054....	253.0	[0..16]	[352..390]
DEGS1_XENTR - Sphingolipid delta(4)-desaturase DES1 OS=Xenopus tropicalis GN=degs1 PE=2 SV=1	236.0	[0..20]	[349..1]
gi\|42546433, gi\|... - gi\|46137717\|ref\|XP_390550.1\| hypothetical protein FG10374.1 [Gibberella zeae PH-1], gi\|42546433\|gb\|E...	232.0	[0..14]	[352..14]
gi\|116197643, gi... - gi\|88178256\|gb\|EAQ85724.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11619...	232.0	[0..14]	[347..35]
gi\|221483284 - gi\|221483284\|gb\|EEE21603.1\| membrane fatty acid desaturase, putative [Toxoplasma gondii GT1] gi\|14270087 - gi\|14270087\|dbj\|BAB58879.1\| membrane fatty acid desaturase [Toxoplasma gondii]	231.0	[0..2]	[353..46]
FAD3C_RICCO - Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1	231.0	[0..22]	[341..95]
gi\|45385976 - gi\|45385976\|gb\|AAS59833.1\| chloroplast omega-3 desaturase [Malus x domestica]	229.0	[0..28]	[342..82]
ifc-PA - The gene infertile crescent is referred to in FlyBase by the symbol Dmel\ifc (CG9078, FBgn0001941). ...	229.0	[0..25]	[349..6]
DEGS1_CHICK - Sphingolipid delta(4)-desaturase DES1 OS=Gallus gallus GN=DEGS1 PE=2 SV=1	229.0	[0..26]	[349..7]
gi\|110084514 - gi\|110084514\|gb\|ABG49414.1\| chloroplast omega-3 fatty acid desaturase [Jatropha curcas]	229.0	[0..27]	[341..97]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESTATTTA VPPPAEESWN ADSEDVHQFY WTYTEEPHKS RRAAILKAHP EIASLNGYEP  60
   61 LTKWIVLGVV SLQFTCAYLL SQSSLLSWKF FLTAYFIGAF CNQNLFLAIH ELSHNLGFKK 120
  121 TLYNRAYCLF ANLPVGAPFA ASFRPYHMEH HAYQGV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [157-362]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGMDTDLPTR AELILFDNVL GKAFFCTFQL LFYAFRPLVV RRLPFTLMHF WNIIVQFSFD  60
   61 YLVVRYVGWR ALAYFFMSSF LAGSLHPTAG HFLSEHYNMT RTRLIASGPG KETPLETFSY 120
  121 YGPLNFFVYN AGYHIEHHDF PYVAWTRIGK VRELAPEFYD NIPDCKSWCG IIYQFITDSN 180
  181 VGMWCRVKRK QKHADIPTKS MHLHVS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.206	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits