YRC Public Data Repository - Protein Structure Prediction

Protein:	dps1
Organism:	Schizosaccharomyces pombe
Length:	378 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dps1.

Description	E-value	Query Range	Subject Range
gi\|42550814, gi\|... - gi\|46138837\|ref\|XP_391109.1\| hypothetical protein FG10933.1 [Gibberella zeae PH-1], gi\|42550814\|gb\|E...	318.0	[0..3]	[378..35]
gi\|114189247, gi... - gi\|115402649\|ref\|XP_001217401.1\| decaprenyl-diphosphate synthase subunit 1 [Aspergillus terreus NIH2...	318.0	[0..5]	[378..44]
gi\|62129446, gi\|... - gi\|62181813\|ref\|YP_218230.1\| octaprenyl diphosphate synthase [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=ispB] [protein=octaprenyl diphosphate synthase] [protein_id=YP_005239484.1] [location=3487069....	314.0	[0..26]	[378..57]
gi\|111068656 - gi\|111068656\|gb\|EAT89776.1\| hypothetical protein SNOG_03045 [Phaeosphaeria nodorum SN15]	314.0	[0..5]	[378..36]
gi\|11279234 - pir\|\|A82322 octaprenyl-diphosphate synthase VC0434 [imported] - Vibrio cholerae (strain N16961 serog... gi\|227080645, gi... - gi\|227080645\|ref\|YP_002809196.1\| octaprenyl-diphosphate synthase [Vibrio cholerae M66-2], gi\|2270085... gi\|148873684, gi... - gi\|153830825\|ref\|ZP_01983492.1\| octaprenyl-diphosphate synthase [Vibrio cholerae 623-39], gi\|1488736... gi\|146316496, gi... - gi\|227116838\|ref\|YP_002818734.1\| octaprenyl-diphosphate synthase [Vibrio cholerae O395], gi\|22701228... gi\|121727265, gi... - gi\|121727265\|ref\|ZP_01680424.1\| octaprenyl-diphosphate synthase [Vibrio cholerae V52], gi\|121630384\|... gi\|9654858, gi\|1... - gi\|9654858\|gb\|AAF93607.1\| octaprenyl-diphosphate synthase [Vibrio cholerae O1 biovar El Tor str. N16... gi\|254850665, gi... - gi\|254850665\|ref\|ZP_05240015.1\| octaprenyl-diphosphate synthase [Vibrio cholerae MO10], gi\|254846370... gi\|121590773, gi... - gi\|121590773\|ref\|ZP_01678102.1\| octaprenyl-diphosphate synthase [Vibrio cholerae 2740-80], gi\|121547... gi\|153822596, gi... - gi\|153822596\|ref\|ZP_01975263.1\| octaprenyl-diphosphate synthase [Vibrio cholerae B33], gi\|126519900\|... gi\|153819559, gi... - gi\|153819559\|ref\|ZP_01972226.1\| octaprenyl-diphosphate synthase [Vibrio cholerae NCTC 8457], gi\|1265...	314.0	[0..1]	[378..1]
COQ1_YARLI - Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Yarrowia lipolytica GN=COQ1 PE=3 SV=1 COQ1_YARLI - Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / ...	313.0	[0..14]	[378..50]
gi\|169779988 - gi\|169779988\|ref\|XP_001824458.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238505986, gi... - gi\|238505986\|ref\|XP_002384195.1\| hexaprenyl pyrophosphate synthetase Coq1, putative [Aspergillus fla... gi\|83773198 - gi\|83773198\|dbj\|BAE63325.1\| unnamed protein product [Aspergillus oryzae]	313.0	[0..5]	[378..47]
gi\|159128008 - gi\|159128008\|gb\|EDP53123.1\| hexaprenyl pyrophosphate synthetase Coq1, putative [Aspergillus fumigatu... gi\|71000625, gi\|... - gi\|71000625\|ref\|XP_754994.1\| hexaprenyl pyrophosphate synthetase Coq1 [Aspergillus fumigatus Af293],...	312.0	[0..5]	[378..46]
COQ1_NEUCR - Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / ... COQ1_NEUCR - Probable hexaprenyl pyrophosphate synthase, mitochondrial OS=Neurospora crassa GN=NCU02305 PE=3 SV=1	311.0	[0..17]	[378..66]
gi\|19887236, gi\|... - gi\|20094211\|ref\|NP_614058.1\| geranylgeranyl pyrophosphate synthase [Methanopyrus kandleri AV19], gi\|...	309.0	[0..31]	[377..3]

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Predicted Domain #1

Region A:
Residues: [1-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQYVYLKHM RKLWSLGKVR STVLRFSTTN RNASHLIKNE LEQISPGIRQ MLNSNSEFLE  60
   61 ECSKYYTIAQ GKQMRPSLVL LMSKATSLCH GIDRSVVGDK YIDDDDLRSF STGQILPSQL 120
  121 RLAQITEMIH IASLLHDDVI DHANVRRGSP SSNVAFGNRR SILAGNFILA RASTAMARLR 180
  181 NPQVTELLAT VIADLVRGEF LQLKNTMDPS SLEIKQSNFD YYIEKSFLKT ASLISKSCKA 240
  241 STILGQCSPT VATAAGEYGR CIGTAFQLMD DVLDYTSKDD TLGKAAGADL KLGLATAPVL 300
  301 FAWKKYPELG AMIVNRFNHP SDIQRARSLV ECTDAIEQTI TWAKEYIKKA KDSLLCLPDS 360
  361 PARKALFALA DKVITRKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.30103
Match:	1wy0A
Description:	Crystal structure of geranylgeranyl pyrophosphate synthetase from Pyrococcus horikoshii Ot3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits