YRC Public Data Repository - Protein Structure Prediction

Protein:	dpm3
Organism:	Schizosaccharomyces pombe
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dpm3.

Description	E-value	Query Range	Subject Range
gi\|67541657, gi\|... - gi\|67541657\|ref\|XP_664596.1\| hypothetical protein AN6992.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	110.0	[0..1]	[89..1]
gi\|46390950, gi\|... - gi\|50912793\|ref\|XP_467804.1\| dolichol-phosphate mannosyltransferase-like [Oryza sativa (japonica cul...	109.0	[0..1]	[88..28]
gi\|39968889, gi\|... - gi\|39968889\|ref\|XP_365835.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA49891.... gi\|59803050 - gi\|59803050\|gb\|AAX07698.1\| dolichol-phosphate mannosyltransferase subunit 3-like protein [Magnaporth...	107.0	[0..1]	[89..1]
gi\|21553435, gi\|... - gi\|28973443\|gb\|AAO64046.1\| unknown protein [Arabidopsis thaliana], gi\|26451193\|dbj\|BAC42700.1\| unkno...	107.0	[0..1]	[88..1]
DPM3_DICDI - Dolichol-phosphate mannosyltransferase subunit 3 OS=Dictyostelium discoideum GN=dpm3 PE=3 SV=1 gi\|66817550, gi\|... - gi\|66817550\|ref\|XP_642628.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60470706\|gb\|EAL...	105.0	[0..1]	[88..1]
gi\|46127799, gi\|... - gi\|46127799\|ref\|XP_388453.1\| hypothetical protein FG08277.1 [Gibberella zeae PH-1], gi\|42548740\|gb\|E...	104.0	[0..1]	[89..1]
gi\|73961608 - gi\|73961608\|ref\|XP_855046.1\| PREDICTED: similar to Dolichol-phosphate mannosyltransferase subunit 3 ...	102.0	[0..1]	[87..64]
gi\|30315013, gi\|... - gi\|30315013\|gb\|AAP30738.1\| unknown [Vitis vinifera], gi\|225437991\|ref\|XP_002272906.1\| PREDICTED: hyp...	102.0	[0..1]	[88..1]
gi\|74355449 - gi\|74355449\|gb\|AAI04482.1\| DPM3 protein [Homo sapiens]	100.0	[0..1]	[87..22]
gi\|114559987 - gi\|114559987\|ref\|XP_524894.2\| PREDICTED: similar to DPM3 protein [Pan troglodytes]	99.0	[0..1]	[87..48]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRIHKVILY YVSLTILYRV TYLFDLEEPW STLRPYTPYL FILAFGSYLG ITLLYNVATT  60
   61 NDKPEAYVDL VKDIKEAQDA LRSKGMTIED

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.481486
Match:	PF08285.2
Description:	No description for PF08285.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits