YRC Public Data Repository - Protein Structure Prediction

Protein:	dpm1
Organism:	Schizosaccharomyces pombe
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dpm1.

Description	E-value	Query Range	Subject Range
gi\|50759086 - gi\|50759086\|ref\|XP_417511.1\| PREDICTED: similar to dolichol-phosphate-mannose synthase [Gallus gallu...	172.0	[0..3]	[234..8]
gi\|187028529, gi... - gi\|39587882\|emb\|CAE67900.1\| Hypothetical protein CBG13497 [Caenorhabditis briggsae], gi\|187028529\|em... gi\|157759407 - gi\|157759407\|ref\|XP_001672047.1\| Hypothetical protein CBG13497 [Caenorhabditis briggsae AF16]	170.0	[0..2]	[234..4]
gi\|57525735, gi\|... - gi\|57525735\|ref\|NP_001003596.1\| dolichyl-phosphate mannosyltransferase 1 [Danio rerio], gi\|50418523\|...	170.0	[0..3]	[234..16]
DPM1_MOUSE - Dolichol-phosphate mannosyltransferase subunit 1 OS=Mus musculus GN=Dpm1 PE=1 SV=1	170.0	[0..3]	[234..26]
gi\|72076181, gi\|... - gi\|72076181\|ref\|XP_793909.1\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|115...	169.0	[0..1]	[234..1]
gi\|46329779 - gi\|46329779\|gb\|AAH68840.1\| LOC414689 protein [Xenopus laevis]	169.0	[0..3]	[234..31]
CG10166-PA - This gene is referred to in FlyBase by the symbol Dmel\CG10166 (CG10166, FBgn0032799). It is a prote...	168.0	[0..1]	[234..1]
gi\|149042795, gi... - gi\|34860748\|ref\|XP_215949.2\| PREDICTED: similar to Dolichol-phosphate mannosyltransferase (Dolichol-...	168.0	[0..3]	[234..26]
DPM1_BOVIN - Dolichol-phosphate mannosyltransferase subunit 1 OS=Bos taurus GN=DPM1 PE=2 SV=1	167.0	[0..3]	[234..26]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKYSVLLPT YNERKNLPII TYLIAKTFDQ EKLDWEIVII DDASPDGTQE VAKELQKIYG  60
   61 EDKILLKPRS GKLGLGTAYI HGLKFATGDF VIIMDADFSH HPKYLPEFIK LQKEHNYDIV 120
  121 LGTRYAKDGG VYGWNLKRKF ISRGANLLAS TVLGTGVSDV TGSFRLYKKP VLETLMSEVT 180
  181 SKGYVFQMEI IARAREHNYT IGEVPIAFVD RLYGESKLGM DDILGYLKGV FSLLFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	2d7iA
Description:	No description for 2d7iA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits