YRC Public Data Repository - Protein Structure Prediction

Protein:	cdm1
Organism:	Schizosaccharomyces pombe
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdm1.

Description	E-value	Query Range	Subject Range
gi\|39977693, gi\|... - gi\|39977693\|ref\|XP_370234.1\| hypothetical protein MGG_06731 [Magnaporthe grisea 70-15], gb\|EAA55074....	180.0	[0..16]	[154..35]
gi\|42551299, gi\|... - gi\|46123309\|ref\|XP_386208.1\| hypothetical protein FG06032.1 [Gibberella zeae PH-1], gi\|42551299\|gb\|E...	179.0	[0..13]	[154..36]
gi\|46095746, gi\|... - gi\|71004016\|ref\|XP_756674.1\| hypothetical protein UM00527.1 [Ustilago maydis 521], ref\|XP_398142.1\| ...	156.0	[0..25]	[147..33]
gi\|49090034, gi\|... - gi\|67523981\|ref\|XP_660050.1\| hypothetical protein AN2446.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	154.0	[0..25]	[154..58]
gi\|32404346, gi\|... - gi\|32404346\|ref\|XP_322786.1\| hypothetical protein [Neurospora crassa], gi\|28917885\|gb\|EAA27571.1\| pr... gi\|85081895 - gi\|85081895\|ref\|XP_956807.1\| hypothetical protein NCU03528 [Neurospora crassa OR74A]	151.0	[0..55]	[154..130]
gi\|114195629, gi... - gi\|115388079\|ref\|XP_001211545.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	131.0	[0..22]	[154..56]
gi\|220696930, gi... - gi\|238490560\|ref\|XP_002376517.1\| DNA polymerase delta subunit 4, putative [Aspergillus flavus NRRL33... gi\|83768652 - gi\|83768652\|dbj\|BAE58789.1\| unnamed protein product [Aspergillus oryzae] gi\|169772645 - gi\|169772645\|ref\|XP_001820791.1\| hypothetical protein [Aspergillus oryzae RIB40]	130.0	[0..2]	[154..26]
gi\|159124513 - gi\|159124513\|gb\|EDP49631.1\| DNA polymerase delta subunit 4, putative [Aspergillus fumigatus A1163] gi\|70992191, gi\|... - gi\|70992191\|ref\|XP_750944.1\| DNA polymerase delta subunit 4 [Aspergillus fumigatus Af293], gi\|668485...	128.0	[0..2]	[154..26]
gi\|88179335, gi\|... - gi\|88179335\|gb\|EAQ86803.1\| hypothetical protein CHGG_08056 [Chaetomium globosum CBS 148.51], gi\|1161...	123.0	[0..60]	[154..108]
gi\|119175847, gi... - gi\|90298866\|gb\|EAS28497.1\| hypothetical protein CIMG_09701 [Coccidioides immitis RS], gi\|119175847\|r...	116.0	[0..36]	[154..91]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKRTTQAKK SGQNTNIRDV FPHVVRSNSS QSHIGKKVSS EQSPTPDVTI TTKTLDERIK  60
   61 EDDELSKEVE EAWNQIMAER ISEPIHCENI TKVEFILHHF DTTARYGPYL GMTRMQRWKR 120
  121 AKNFNLNPPE TVGKILMLEE ADEENRKRES LFYDLQTIPG

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	111.187087
Match:	PF04081.4
Description:	No description for PF04081.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits