YRC Public Data Repository - Protein Structure Prediction

Protein:	din1
Organism:	Schizosaccharomyces pombe
Length:	352 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for din1.

Description	E-value	Query Range	Subject Range
gi\|46125935, gi\|... - gi\|46125935\|ref\|XP_387521.1\| hypothetical protein FG07345.1 [Gibberella zeae PH-1], gi\|42553318\|gb\|E...	351.0	[0..17]	[351..94]
DOM3Z_GIBZE - Protein RAI1 OS=Gibberella zeae GN=RAI1 PE=3 SV=3 DXO_GIBZE - Decapping nuclease RAI1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN...	349.0	[0..17]	[351..19]
DXO_EMENI - Decapping nuclease rai1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 ... DOM3Z_EMENI - Protein rai1 OS=Emericella nidulans GN=rai1 PE=3 SV=3	349.0	[0..18]	[351..21]
gi\|111307235 - gi\|111307235\|gb\|AAI20426.1\| DOM3Z protein [Bos taurus]	337.0	[0..6]	[348..34]
gi\|254939706, gi... - gi\|2944422\|gb\|AAC05281.1\| hypothetical protein [Mus musculus], gi\|254939706\|ref\|NP_001157242.1\| DOM-...	336.0	[0..6]	[348..34]
DXO_RAT - Decapping and exoribonuclease protein OS=Rattus norvegicus GN=Dxo PE=1 SV=1	333.0	[0..6]	[348..34]
gi\|114606565, gi... - gi\|114606567\|ref\|XP_001161964.1\| PREDICTED: DOM-3 homolog Z isoform 3 [Pan troglodytes], gi\|11460656...	331.0	[0..6]	[348..34]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLREFSFYDV PPAHVPPVSE PLEIACYSLS RDRELLLDDS KLSYYYPPPL FSDLNTGFPN  60
   61 RFHPPKSDPD PISIVKDVLM TKGIQMNSSF LTWRGLITKI MCAPLDPRNH WETYLVMDPT 120
  121 SGIIMMEERT RSETSYANQD RMCYWGYKFE AISTLPEIWD ACSRDQIEQR DNQDVVPDEQ 180
  181 YCSIVKINIG KSKLILAGEV DCIWDKKPCS A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [212-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KESDVHSDDG TIEEDASNAE NPNLHYVELK TSKKYPLENY GMRKKLLKYW AQSFLLGIGR  60
   61 IIIGFRDDNG ILIEMKELFT HQIPKMLRPY FKPNDWTPNR LLVVLEHALE WIKQTVKQHP 120
  121 PSTEFTLSYT GGSKLVLRQI I

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.356547
Match:	PF08652.2
Description:	No description for PF08652.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits