| Protein: | prp22 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1168 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prp22.
| Description | E-value | Query Range |
Subject Range |
|
|
716.0 | [0..1] | [1163..1] |
|
|
697.0 | [0..1] | [1162..1] |
|
|
697.0 | [0..1] | [1162..1] |
|
|
696.0 | [0..2] | [1168..7] |
|
|
696.0 | [0..2] | [1165..14] |
|
|
694.0 | [0..13] | [1163..13] |
|
|
692.0 | [0..2] | [1165..20] |
|
|
692.0 | [0..1] | [1162..1] |
|
Region A: Residues: [1-294] |
1 11 21 31 41 51
| | | | | |
1 MDDLKELEYL SLVSKVASEI RNHTGIDDNT LAEFIINLHD QSKNYDEFKN NVLSCGGEFT 60
61 DSFLQNISRL IKEIKPKDDI PTDNVNNGSN SVNGASHDLD SKDVDKQHQR KMFPGLSIPN 120
121 STNNLRDRPA LMDNAMDELE ELSTLAKTRR NDRDSRRDER HYLNGIRERR ERSISPSFSH 180
181 HSRTSISGQS HSSRSSRGPL LNAPTLYGIY SGVVSGIKDF GAFVTLDGFR KRTDGLVHIS 240
241 NIQLNGRLDH PSEAVSYGQP VFVKVIRIDE SAKRISLSMK EVNQVTGEDL NPDQ
|
| Detection Method: |  |
| Confidence: | 15.09691 |
| Match: | 1e3hA |
| Description: | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [295-389] |
1 11 21 31 41 51
| | | | | |
1 VSRSTKKGSG ANAIPLSAQN SEIGHVNPLE TFTSNGRKRL TSPEIWELQQ LAASGAISAT 60
61 DIPELNDGFN TNNAAEINPE DDEDVEIELR EEEPG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [390-473] |
1 11 21 31 41 51
| | | | | |
1 FLAGQTKVSL KLSPIKVVKA PDGSLSRAAM QGQILANDRR EIRQKEAKLK SEQEMEKQDL 60
61 SLSWQDTMSN PQDRKFAQDV RDSA
|
| Detection Method: | |
| Confidence: | 4.522879 |
| Match: | 1rifA |
| Description: | Crystal structure of the UvsW helicase from Bacteriophage T4 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [474-869] |
1 11 21 31 41 51
| | | | | |
1 ARQLTSETPS WRQATRNANI SYGKRTTLSM KEQREGLPVF KLRKQFLEAV SKNQILVLLG 60
61 ETGSGKTTQI TQYLAEEGYT SDSKMIGCTQ PRRVAAMSVA KRVAEEVGCR VGEEVGYTIR 120
121 FEDKTSRMTQ IKYMTDGMLQ RECLVDPLLS KYSVIILDEA HERTVATDVL FGLLKGTVLK 180
181 RPDLKLIVTS ATLDAERFSS YFYKCPIFTI PGRSYPVEIM YTKQPEADYL DAALMTVMQI 240
241 HLSEGPGDIL VFLTGQEEID TSCEILYERS KMLGDSIPEL VILPVYSALP SEIQSRIFEP 300
301 APPGGRKVVI ATNIAETSLT IDGIYYVVDP GFVKQSCFDP KLGMDSLIVT PISQAQARQR 360
361 SGRAGRTGPG KCYRLYTESA YRNEMLPSPI PEIQRQ
|
| Detection Method: | |
| Confidence: | 51.522879 |
| Match: | 1fuuA |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [870-962] |
1 11 21 31 41 51
| | | | | |
1 NLSHTILMLK AMGINDLLNF DFMDPPPAQT MIAALQNLYA LSALDDEGLL TPLGRKMADF 60
61 PMEPQLSKVL ITSVELGCSE EMLSIIAMLS VPN
|
| Detection Method: | |
| Confidence: | 12.39794 |
| Match: | 1c4oA |
| Description: | Nucleotide excision repair enzyme UvrB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [963-1091] |
1 11 21 31 41 51
| | | | | |
1 IWSRPREKQQ EADRQRAQFA NPESDHLTLL NVYTTWKMNR CSDNWCYEHY IQARGMRRAE 60
61 DVRKQLIRLM DRYRHPVVSC GRKRELILRA LCSGYFTNVA KRDSHEGCYK TIVENAPVYM 120
121 HPSGVLFGK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.840 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
|
Region A: Residues: [1092-1168] |
1 11 21 31 41 51
| | | | | |
1 AAEWVIYHEL IQTSKEYMHT VSTVNPKWLV EVAPTFFKFA NANQVSKTKK NLKVLPLYNR 60
61 FEKPDEWRIS KQRKGGR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.839 | N/A | N/A | a.8.9 | Description not found. |
