YRC Public Data Repository - Protein Structure Prediction

Protein:	sdh2
Organism:	Schizosaccharomyces pombe
Length:	252 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sdh2.

Description	E-value	Query Range	Subject Range
gi\|25284631 - pir\|\|D87686 succinate dehydrogenase, iron-sulfur protein [imported] - Caulobacter crescentus gi\|16127756, gi\|... - gi\|16127756\|ref\|NP_422320.1\| succinate dehydrogenase iron-sulfur subunit [Caulobacter crescentus CB1... gi\|220965750, gi... - gi\|221236577\|ref\|YP_002519014.1\| succinate dehydrogenase iron-sulfur protein [Caulobacter crescentus...	268.0	[0..5]	[251..10]
gi\|114554304, gi... - gi\|114554304\|ref\|XP_001155457.1\| PREDICTED: succinate dehydrogenase complex, subunit B, iron sulfur ... SDHB - succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	266.0	[0..6]	[250..24]
gi\|47222756 - gi\|47222756\|emb\|CAG01723.1\| unnamed protein product [Tetraodon nigroviridis]	266.0	[0..12]	[250..30]
gi\|665925, gi\|92... - gi\|9257242\|ref\|NP_002991.1\| succinate dehydrogenase complex, subunit B, iron sulfur (Ip) [Homo sapie...	265.0	[0..6]	[250..24]
gi\|57044796 - gi\|57044796\|ref\|XP_535392.1\| PREDICTED: similar to Succinate dehydrogenase [ubiquinone] iron-sulfur ...	264.0	[0..10]	[250..28]
SDHB_CHICK - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=...	263.0	[0..10]	[250..38]
gi\|108998301 - gi\|108998301\|ref\|XP_001088349.1\| PREDICTED: succinate dehydrogenase complex, subunit B, iron sulfur ... gi\|90086177 - gi\|90086177\|dbj\|BAE91641.1\| unnamed protein product [Macaca fascicularis]	263.0	[0..6]	[250..24]
gi\|25284642, gi\|... - pir\|\|AI2900 succinate dehydrogenase iron-sulfur sdhB [imported] - Agrobacterium tumefaciens (strain ... gi\|15889898, gi\|... - gi\|17936517\|ref\|NP_533307.1\| succinate dehydrogenase catalytic subunit [Agrobacterium tumefaciens st...	263.0	[0..5]	[251..10]
SDHB_RAT - Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattus norvegicus GN=Sdhb...	263.0	[0..11]	[250..31]

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Predicted Domain #1

Region A:
Residues: [1-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATEANISAT SANPQSQGEN LKTFEIYRWN PEKPEVKPKL QKYTVDLTKC GPMVLDALIK  60
   61 IKNEQDPTLT FRRSCREGIC GSCAMNINGS NTLACICNIK KDNKPTKIYP LPHCFIVKDL 120
  121 VPDLTYFYKQ YKSIEPWLQN DNIPKDKEFY QSRADRAKLD GLYECILCAC CSTSCPSYWW 180
  181 NSEEYLGPAV LMQAYRWIID SRDQATAKRL DVMQNSMSVY RCHTIMNCAR TCPKGLNPGL 240
  241 AIAKVKALMA TA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.69897
Match:	1yq3B
Description:	Avian respiratory complex ii with oxaloacetate and ubiquinone
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits