YRC Public Data Repository - Protein Structure Prediction

Protein:	sdh1
Organism:	Schizosaccharomyces pombe
Length:	641 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sdh1.

Description	E-value	Query Range	Subject Range
gi\|49068996, gi\|... - gi\|71005306\|ref\|XP_757319.1\| hypothetical protein UM01172.1 [Ustilago maydis 521], ref\|XP_398787.1\| ...	571.0	[0..3]	[641..13]
gi\|42554377, gi\|... - gi\|46125967\|ref\|XP_387537.1\| hypothetical protein FG07361.1 [Gibberella zeae PH-1], gi\|42554377\|gb\|E...	561.0	[0..7]	[641..1121]
gi\|32417808, gi\|... - gi\|32417808\|ref\|XP_329382.1\| hypothetical protein [Neurospora crassa], gi\|28927045\|gb\|EAA36003.1\| hy... gi\|85117365 - gi\|85117365\|ref\|XP_965239.1\| hypothetical protein [Neurospora crassa OR74A]	558.0	[0..22]	[641..1155]
gi\|44981494 - gi\|44981494\|gb\|AAS51279.1\| ACR052Wp [Ashbya gossypii ATCC 10895] gi\|45185739, gi\|... - gi\|45185739\|ref\|NP_983455.1\| ACR052Wp [Ashbya gossypii ATCC 10895], gi\|44981494\|gb\|AAS51279.1\| ACR05...	556.0	[0..1]	[641..1]
gi\|50550447, gi\|... - gi\|50550447\|ref\|XP_502696.1\| hypothetical protein [Yarrowia lipolytica], gi\|49648564\|emb\|CAG80884.1\|...	554.0	[0..1]	[641..74]
SDHA_YEAST - Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Saccharomyces cerevisiae... gi\|151941660 - gi\|151941660\|gb\|EDN60022.1\| succinate dehydrogenase flavoprotein subunit [Saccharomyces cerevisiae Y... SDH1 - Flavoprotein subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxid...	550.0	[0..1]	[641..1]
gi\|68480345, gi\|... - gi\|68480345\|ref\|XP_715875.1\| hypothetical protein CaO19.440 [Candida albicans SC5314], gi\|68480232\|r... orf19.8070, orf1... - SDH1 CGDID:CAL0005687 Assembly 19, Contig19-10052 (61861, 63777) CDS, translated using codon table 1...	550.0	[0..6]	[641..3]
gi\|50422263, gi\|... - gi\|50422263\|ref\|XP_459694.1\| hypothetical protein DEHA0E09471g [Debaryomyces hansenii CBS767], gi\|49...	546.0	[0..17]	[641..14]
gi\|111606573 - gi\|111606573\|gb\|ABH10651.1\| succinate dehydrogenase [Coccidioides posadasii] gi\|240110563 - gi\|240110563\|gb\|EER28721.1\| succinate dehydrogenase flavoprotein subunit, putative [Coccidioides pos...	545.0	[0..5]	[641..11]
gi\|90307354, gi\|... - gi\|90307354\|gb\|EAS36985.1\| succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial ...	545.0	[0..5]	[641..11]

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Predicted Domain #1

Region A:
Residues: [1-641]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRFRKVAPS LKNGGNLKLF STSSTLKKIA SSQPLRAKQV STSESVKYPV IDHTYDAIVV  60
   61 GAGGAGLRAT FGLAEAGFNT ACITKLFPTR SHTVAAQGGI NAALGNMTKD DWRWHFYDTV 120
  121 KGSDWLGDQD AIHYMTKEAP KAVLELEHFG VPFSRTKEGK IYQRAFGGQS LEYGKGGQAY 180
  181 RCAAVADRTG HSILHTLYGQ SLKHNTNFFI EYFAMDLIME GGECRGVIAM NLEDGSIHRF 240
  241 RAHKTILATG GYGRAYFSCT SAHTCTGDGN AMVSRAGLPL QDLEFVQFHP TGIYGAGCLI 300
  301 TEGCRGEGGY LLNSKGERFM ERYAPTAKDL ASRDVVSRAM TVEIREGRGV GPEKDHCYLQ 360
  361 LSHLPAEILK ERLPGISETA AIFAGVDVTK EPIPVLPTVH YNMGGIPTRF TGEVLTIDEN 420
  421 GKDKIVPGLY AAGEAACVSV HGGNRLGANS LLDIVVFGRA CALHIKDTLE PNTPHKPLAA 480
  481 DAGLDSLKFL DQIRTSQGPK HTSEIRLDMQ KTMQRDVSVF RMEETLQEGV KNIARVDGTY 540
  541 KDIGIRDRGL IWNTDLVEAL ELRNLLTCAV QTANAALNRK ESRGAHARED YPERDDKNWI 600
  601 KHTLTWQHKT GDPVTLKYRA VTRTTMDENE VKPVPPFKRV Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	150.0
Match:	1zoyA
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits