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View Structure Prediction Details

Protein: SPCC1827.06c
Organism: Schizosaccharomyces pombe
Length: 357 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1827.06c.

Description E-value Query
Range
Subject
Range
gi|74194852 - gi|74194852|dbj|BAE26016.1| unnamed protein product [Mus musculus]
337.0 [0..3] [354..1]
G3P_RAT - Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3
335.0 [0..3] [354..1]
G3P_CRIGR - Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2
334.0 [0..3] [354..1]
gi|62318276 - gi|62318276|dbj|BAD93764.1| Glyceraldehyde-3-phosphate dehydrogenase [Meriones unguiculatus]
334.0 [0..3] [354..1]

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Predicted Domain #1
Region A:
Residues: [1-357]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIKKVGILG ATGTVGQRFI TLLSDHPEFK IAVLGASARS AGKPYAVATK WKQSIAMPKE  60
   61 ISQMSVKACD PKEFSECDIV FSGLDADFAG EIEKSFRDAN LVIVSNAKNY RREPTVPLVV 120
  121 PTVNTDHLDV IKYQRQENKL DRGCIITNSN CSTAAVVVPL KALQDAFGPI AQTNVVSMQA 180
  181 ISGAGYPGVS SLDILDNIVP FIGGEEEKIE WETRKILGSV NSTISGYELT DNVVSAQCNR 240
  241 VPVIDGHLMC ISVKFAKTSP TPDQVREVLA NYVSEPQKLG CYSAPKQAIY VFDDSTPDRP 300
  301 QPRLDRNNEN GYAVSVGRIR SDSIFDIKFV SLVHNTVLGA AGAGILNAEV AVKKGLM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.0
Match: 1ys4A
Description: Structure of Aspartate-Semialdehyde Dehydrogenase from Methanococcus jannaschii
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle