YRC Public Data Repository - Protein Structure Prediction

Protein:	spe1
Organism:	Schizosaccharomyces pombe
Length:	432 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spe1.

Description	E-value	Query Range	Subject Range
gi\|73979739 - gi\|73979739\|ref\|XP_856678.1\| PREDICTED: similar to Ornithine decarboxylase (ODC) isoform 8 [Canis fa...	344.0	[0..53]	[429..24]
ODC1 - ornithine decarboxylase 1 gi\|123998958, gi... - gi\|190690881\|gb\|ACE87215.1\| ornithine decarboxylase 1 protein [synthetic construct], gi\|157929112\|gb...	343.0	[0..53]	[431..24]
gi\|60810097 - gi\|60810097\|gb\|AAX36104.1\| ornithine decarboxylase 1 [synthetic construct]	343.0	[0..53]	[431..24]
gi\|109101996 - gi\|109101996\|ref\|XP_001085801.1\| PREDICTED: ornithine decarboxylase 1 isoform 1 [Macaca mulatta]	341.0	[0..53]	[431..24]
DCOR_BOVIN - Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2 SV=1	340.0	[0..53]	[429..24]
gi\|114576087 - gi\|114576087\|ref\|XP_001157086.1\| PREDICTED: ornithine decarboxylase 1 isoform 6 [Pan troglodytes]	340.0	[0..53]	[431..24]

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Predicted Domain #1

Region A:
Residues: [1-432]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAIMEKNML VSESLRTTEL LGHVKPIDSV VTWSSPGSSR QAIGEAFKNT IEEIERAAVR  60
   61 GEPADSDAFF VADLNGVYRQ LLRWHAKLPR VQPFYAVKCN PDPKVLALLN KFGTGFDCAS 120
  121 KGELEQILGL GVSPDRIVYA NPCKAITYVR YAASKGINLM TFDNADELYK VKQHHPNSRL 180
  181 LLRISTDDSN SLCRLSLKFG ASLDDTGKLL DIAKSLELNV VGVSFHVGSG SYDPSAFLDA 240
  241 IQRSRQVFDQ GLERGFNFDL LDIGGGFMND SFDGVADLIR SALDTYFDPS IRVISEPGRF 300
  301 FVSSSFTLAV NVIAKRKLDD EEKVMYYVND GVYGSLNCIL FDHQHPVARV LKCGSRFVYN 360
  361 DLVGTGQHRC FIWGPTCDSL DVIANDAHLP YELNVGDWIY FEDAGAYTVA AASCFNGFKT 420
  421 SRIVYLDTDI LD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	94.154902
Match:	2oo0A
Description:	No description for 2oo0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits