YRC Public Data Repository - Protein Structure Prediction

Protein:	oca8
Organism:	Schizosaccharomyces pombe
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for oca8.

Description	E-value	Query Range	Subject Range
gi\|50844675 - gi\|50844675\|gb\|AAT84459.1\| cytochrome b5 isoform Cb5-B [Vernicia fordii]	153.0	[0..3]	[128..5]
gi\|125550542 - gi\|125550542\|gb\|EAY96251.1\| hypothetical protein OsI_18149 [Oryza sativa Indica Group] CYB5_ORYSJ - Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2 CYB5_ORYSA - Cytochrome b5 - Oryza sativa (Rice)	153.0	[0..2]	[128..5]
CYB5B_ARATH - Cytochrome b5 isoform B OS=Arabidopsis thaliana GN=CYTB5-B PE=1 SV=1	152.0	[0..4]	[128..6]
CYB5_ORYSA - (P49100) Cytochrome b5	151.0	[0..2]	[128..5]
CYB5_TOBAC - Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1	151.0	[0..4]	[129..6]
gi\|54636572, gi\|... - gi\|54636572\|gb\|EAL25975.1\| GA15264-PA [Drosophila pseudoobscura], gi\|125810204\|ref\|XP_001361397.1\| G...	150.0	[0..3]	[128..6]
CYB5_BOROF - Cytochrome b5 OS=Borago officinalis PE=2 SV=1	149.0	[0..4]	[128..3]
gi\|220948800, gi... - gi\|220958220\|gb\|ACL91653.1\| Cyt-b5-PB [synthetic construct], gi\|220948800\|gb\|ACL86943.1\| Cyt-b5-PB [... Cyt-b5-PB - The gene Cyt-b5 is referred to in FlyBase by the symbol Dmel\Cyt-b5 (CG2140, FBgn0033189). It is a p...	149.0	[0..1]	[128..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKTITVEE VLKHNTRDDL YIVVKDKVYD ISKFLDAHPG GEEVLVDLAG RDASGPFEDV  60
   61 GHSEDAQELL EKFYIGNLLR TEDGPQLPTT GAAAGGSGYD SSQPVKPAMW LFVLVMVVAY 120
  121 FAFRKYVLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	2i96A
Description:	No description for 2i96A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits