YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC29A10.16c
Organism:	Schizosaccharomyces pombe
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC29A10.16c.

Description	E-value	Query Range	Subject Range
gi\|68438685 - gi\|68438685\|ref\|XP_698851.1\| PREDICTED: similar to cytochrome b5 [Danio rerio]	146.0	[0..3]	[124..11]
gi\|1613840 - gi\|1613840\|gb\|AAB16807.1\| cytochrome b5 [Mesocricetus auratus]	144.0	[0..3]	[124..9]
gi\|109122478 - gi\|109122478\|ref\|XP_001083378.1\| PREDICTED: similar to Cytochrome b5 [Macaca mulatta]	143.0	[0..2]	[124..8]
gi\|123995335, gi... - gi\|123995335\|gb\|ABM85269.1\| cytochrome b5 type A (microsomal) [synthetic construct], gi\|123980760\|gb... CYB5A - cytochrome b5 type A (microsomal)	142.0	[0..2]	[124..8]
gi\|226450 - gi\|226450\|prf\|\|1513199B cytochrome b5	142.0	[0..4]	[124..12]
gi\|76640228 - gi\|76640228\|ref\|XP_582806.2\| PREDICTED: cytochrome b5 type B (outer mitochondrial membrane) [Bos tau...	142.0	[0..2]	[124..110]
gi\|220948800, gi... - gi\|220958220\|gb\|ACL91653.1\| Cyt-b5-PB [synthetic construct], gi\|220948800\|gb\|ACL86943.1\| Cyt-b5-PB [... Cyt-b5-PB - The gene Cyt-b5 is referred to in FlyBase by the symbol Dmel\Cyt-b5 (CG2140, FBgn0033189). It is a p...	141.0	[0..4]	[124..7]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVKYFEPEE IVEHNNSKDM YMVINGKVYD VSNFADDHPG GLDIMLDYAG QDATKAYQDI  60
   61 GHSIAADELL EEMYIGDLKP GTEERLKELK KPRSFDNDTP PLPLLIALIV LPAIAVIVFV 120
  121 KLNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.30103
Match:	2oz0A
Description:	No description for 2oz0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits