YRC Public Data Repository - Protein Structure Prediction

Protein:	cyp7
Organism:	Schizosaccharomyces pombe
Length:	463 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cyp7.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	189.0	[0..174]	[463..1821]
gi\|114596627 - gi\|114596627\|ref\|XP_001145721.1\| PREDICTED: peptidylprolyl isomerase D isoform 2 [Pan troglodytes]	185.0	[0..2]	[326..5]
PPID_MOUSE - Peptidyl-prolyl cis-trans isomerase D OS=Mus musculus GN=Ppid PE=1 SV=3	184.0	[0..2]	[349..5]
gi\|62655561, gi\|... - gi\|62655561\|ref\|XP_576630.1\| PREDICTED: similar to peptidylprolyl isomerase D [Rattus norvegicus], r...	183.0	[0..2]	[349..5]
gi\|49457115 - gi\|49457115\|emb\|CAG46878.1\| PPID [Homo sapiens] gi\|60815620 - gi\|60815620\|gb\|AAX36351.1\| peptidylprolyl isomerase D [synthetic construct]	179.0	[0..2]	[349..5]
gi\|109076044 - gi\|109076044\|ref\|XP_001097233.1\| PREDICTED: similar to peptidylprolyl isomerase D [Macaca mulatta]	178.0	[0..2]	[349..5]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLTNLEPL ATGTVILKTT RGDIQIELWC KEVPKACRNF IQLCLEGYYD GTIVHRVVPE  60
   61 FLIQGGDPTG TGMGGESIYG EPFAVETHPR LRFIRRGLVG MACTENEGNN SQFFITL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	2hq6A
Description:	No description for 2hq6A was found.

Predicted Domain #2

Region A:
Residues: [118-463]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPTPEWNGKQ TLFGRVVGDT IYNVVRISEL ELDANQRPVF PPKIISTEVI DNYFTDIKPR  60
   61 STKEEREKIA NELAHQEKQK ERNKLLKSGR RNKAVLSFGD EVDMPIVKKP LRQKTPVSRS 120
  121 SDTTTELSKD LISSSSSIHS TYSSAQTGLT SAKVSSDEYA RQVDTLDTKL NSSSKSKVQE 180
  181 EISRLKSELR DLEKSGGSSN SKPVVVRPKK RNILTEELEK YKKSKKVVLG KRKNLENDEE 240
  241 STLRALSSFQ SKIRNAEDED VMDSQYGSKI EDTPCSLHNV PGCFSCFDRL GEKNITETNS 300
  301 NWFAHRLVAE NDPTRRTEEL RIQRAEELKD VPSARPKKLL MKRDII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits