YRC Public Data Repository - Protein Structure Prediction

Protein:	prp45
Organism:	Schizosaccharomyces pombe
Length:	557 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prp45.

Description	E-value	Query Range	Subject Range
gi\|113537715, gi... - gi\|50912993\|ref\|XP_467904.1\| putative GAMYB-binding protein [Oryza sativa (japonica cultivar-group)]... gi\|125541209 - gi\|125541209\|gb\|EAY87604.1\| hypothetical protein OsI_09015 [Oryza sativa Indica Group]	307.0	[0..6]	[556..2]
gi\|83771403 - gi\|83771403\|dbj\|BAE61535.1\| unnamed protein product [Aspergillus oryzae] gi\|220691587, gi... - gi\|238503087\|ref\|XP_002382777.1\| transcriptional regulator Cwf13/SkiP, putative [Aspergillus flavus ... gi\|169776403 - gi\|169776403\|ref\|XP_001822668.1\| hypothetical protein [Aspergillus oryzae RIB40]	301.0	[0..1]	[555..1]
PRP45_EMENI - Pre-mRNA-processing protein 45 OS=Emericella nidulans GN=prp45 PE=3 SV=1 PRP45_EMENI - Pre-mRNA-processing protein 45 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NR...	295.0	[0..1]	[555..1]
gi\|51971076 - gi\|51971076\|dbj\|BAD44230.1\| unknown protein [Arabidopsis thaliana]	295.0	[0..6]	[556..1]
gi\|71798018 - gi\|71798018\|gb\|AAZ38969.1\| GAMYB-binding protein [Glycine max]	288.0	[0..41]	[556..48]
PRP45_USTMA - Pre-mRNA-processing protein 45 OS=Ustilago maydis GN=PRP45 PE=3 SV=1 PRP45_USTMA - Pre-mRNA-processing protein 45 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PRP45 PE=3 SV=1	286.0	[0..4]	[555..18]
gi\|109479738 - gi\|109479738\|ref\|XP_001059272.1\| PREDICTED: similar to Nuclear protein SkiP (Ski-interacting protein...	284.0	[0..6]	[554..63]
gi\|108868987, gi... - gi\|157105626\|ref\|XP_001648953.1\| nuclear protein skip [Aedes aegypti], gi\|108868987\|gb\|EAT33212.1\| n...	283.0	[0..6]	[554..1]
gi\|58385264, gi\|... - gi\|58385264\|ref\|XP_313821.2\| ENSANGP00000003971 [Anopheles gambiae str. PEST], gi\|55240897\|gb\|EAA091...	281.0	[0..6]	[554..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLSEELSS ILPNPDFDDE EEDYVERETS HADERQIGVK FHIPPYGQRK GWFPSSPEDF  60
   61 GDGGAFPEIH VAQYPLDMGR KRSAKSAGNT LALQVTSSGA VDYNAIARQG HEHGELVQAS 120
  121 FRDLIPLRAR LGVGEISLEK PSDEQKQEVA NKTKLALQKI LSKQIAQSQP KSAVVQQRDD 180
  181 PVYIRYTPSN QM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [193-557]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQALSKQRII KMVTAEQDPM EPPKFRHKKV PRGPPSPPPP VLHSPPRKVS AQEQQDWQIP  60
   61 PSISNWKNPK GYTIPLDKRL AADGRGLNDV EINDGFAKFS EALYTVERQA REEVRYRAIM 120
  121 RQKMAEKEKQ EKEQRLFMLA QKAREDRMGR NAASSGPSHA KPRSTSVSSE ERSRSRAGSF 180
  181 SHHSESENED EDSEAFRRRQ ELRRERRRQA EKDLRLSRMG AEKRAKLAEK DRPRDVAERV 240
  241 ALGLSKPSMS SDTMIDSRLF NQASGLGSGF QDEDSYNVYD KPWRAAPSST LYRPGATLSR 300
  301 QVDASAELER ITSESRYDVL GNAHKKFKGS DEVVESRAGP VTFEKDIADP FGVDTFLNNV 360
  361 SSKKT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits