YRC Public Data Repository - Protein Structure Prediction

Protein:	cwf3
Organism:	Schizosaccharomyces pombe
Length:	790 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cwf3.

Description	E-value	Query Range	Subject Range
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	324.0	[0..5]	[788..84]
gi\|33640682, gi\|... - gi\|33862569\|ref\|NP_894129.1\| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...	304.0	[0..2]	[787..93]
gi\|118354513 - gi\|118354513\|ref\|XP_001010518.1\| TPR Domain containing protein [Tetrahymena thermophila] gi\|118354513, gi... - gi\|89292285\|gb\|EAR90273.1\| TPR Domain containing protein [Tetrahymena thermophila SB210], gi\|1183545...	300.0	[0..2]	[788..410]
gi\|113477431, gi... - gi\|71673743\|ref\|ZP_00671491.1\| TPR repeat:TPR-related region [Trichodesmium erythraeum IMS101], gi\|7...	294.0	[0..2]	[788..706]
SYF1_RAT - Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus GN=Xab2 PE=2 SV=1	290.0	[0..25]	[790..28]
SYF1_MOUSE - Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=Xab2 PE=1 SV=1	290.0	[0..25]	[790..28]
gi\|91092544 - gi\|91092544\|ref\|XP_968085.1\| PREDICTED: similar to XPA-binding protein 2 [Tribolium castaneum]	288.0	[0..14]	[742..18]
gi\|110665580, gi... - gi\|115495561\|ref\|NP_001069387.1\| XPA binding protein 2 [Bos taurus], gi\|110665580\|gb\|ABG81436.1\| XPA...	288.0	[0..25]	[790..28]

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Predicted Domain #1

Region A:
Residues: [1-586]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDVIPLKVN FDLINVDDEP FELELLRDPY SLKSWLRYIK THEGSTLEKR VLLFERACSE  60
   61 LPGSYKIWKS YLELRVAHVE HLNPYFHAEA FASVNDCFER SLILLHKMPV IWKLYLQFLM 120
  121 KQPNVTKIRC TFNSALRALP VTQHDDIWDM FTKYAEDIGG LFCIHVYRRY IQVEPRAIEN 180
  181 YIEILCKLGL WNEAARQYED ILNRPVFLSA KRKSNYQIWL EFSELVVQHP DHTQNIDVEK 240
  241 VFRAGIKRFS DQAGKLWTYL AQYYIRIGDY EKARSTFYEG MNNIMTVRNF TIIFDAFVEF 300
  301 EEQWLSARVE ASSGNANDEL SIDFHMAWLE KILDKRPLYI NDVLLRQNIN NVDEWLRRVK 360
  361 FLEDDSEKVV QVYTDAIKNV NPKLAHGSLG KLFSEFARFY ENFDDLEQSR IIFEKATHVP 420
  421 YKTVNELAQV WIDWAEMELR HQNFDAARKL IGDAVHAPRK SHISFFDESL SPQVRLHKSS 480
  481 KIWMYYLDLE ESVGTIETTR KLYDRVFELK IATPQVVVNY ANLLEENAYF EDSFKIYERG 540
  541 VALFSYPVAF ELWNLYLTKF VKRYQGTHME RTRDLFEQAL EGCPPE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.154902
Match:	2gw1A
Description:	No description for 2gw1A was found.

Predicted Domain #2

Region A:
Residues: [587-790]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSKSIYLLYA DFEEKFGKAK RSISILEKAA DKVKTADRLA IYNVLLVKVA LNYGVLATRT  60
   61 VYEKAIESLS DSEVKDMCLR FAEMETKLGE IDRARLIYIH GSQYCDPRVE TDYWKAWQEF 120
  121 EIRYGNPEET VKEMLRIKRS VQTKFSTDSL HIAKRAAKIE SAAAPMDPME QLEMEKSEGP 180
  181 KALAGFVLSK SNPQETSKIT GEEN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.39794
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits