YRC Public Data Repository - Protein Structure Prediction

Protein:	ctr6
Organism:	Schizosaccharomyces pombe
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ctr6.

Description	E-value	Query Range	Subject Range
gi\|57094253 - gi\|57094253\|ref\|XP_538800.1\| PREDICTED: similar to High-affinity copper uptake protein 1 (hCTR1) (Co...	140.0	[0..3]	[139..86]
gi\|45387849, gi\|... - gi\|45501115\|gb\|AAH67161.1\| Solute carrier family 31 (copper transporters), member 1 [Danio rerio], g...	139.0	[0..2]	[139..22]
gi\|28201980, gi\|... - gi\|28201980\|ref\|NP_780299.1\| solute carrier family 31, member 1 [Mus musculus], gi\|26338440\|dbj\|BAC3...	139.0	[0..3]	[139..38]
gi\|47575788, gi\|... - gi\|89273850\|emb\|CAJ83621.1\| solute carrier family 31 (copper transporters), member 1 [Xenopus tropic...	136.0	[0..4]	[139..26]
gi\|109110536 - gi\|109110536\|ref\|XP_001103110.1\| PREDICTED: solute carrier family 31 (copper transporters), member 1...	134.0	[0..2]	[139..31]
gi\|46101719, gi\|... - gi\|71023795\|ref\|XP_762127.1\| hypothetical protein UM05980.1 [Ustilago maydis 521], ref\|XP_403595.1\| ...	134.0	[0..2]	[140..10]
gi\|46107780, gi\|... - gi\|46107780\|ref\|XP_380949.1\| hypothetical protein FG00773.1 [Gibberella zeae PH-1], gi\|42547876\|gb\|E...	133.0	[0..1]	[145..12]
SLC31A1 - solute carrier family 31 (copper transporters), member 1 gi\|114626217 - gi\|114626217\|ref\|XP_520197.2\| PREDICTED: solute carrier family 31 (copper transporters), member 1 is... gi\|123995913, gi... - gi\|123995913\|gb\|ABM85558.1\| solute carrier family 31 (copper transporters), member 1 [synthetic cons...	133.0	[0..2]	[139..31]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHGGNSTMR HCSMKMTFNT DYDNLCIVFK SWHIGNLSQF LLSLLAIAIL GYLFERLRSF  60
   61 TSLKETEFQR GYAGQQSEGL LTHHSKSLKS GRPFRLCALY AVQLVFSYFL MLVAMTYNAY 120
  121 VILAIAIGAA FGYRRSHCDT VQTVGLCH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	50.744727
Match:	PF04145.6
Description:	No description for PF04145.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits