YRC Public Data Repository - Protein Structure Prediction

Protein:	ctr4
Organism:	Schizosaccharomyces pombe
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ctr4.

Description	E-value	Query Range	Subject Range
gi\|45387849, gi\|... - gi\|45501115\|gb\|AAH67161.1\| Solute carrier family 31 (copper transporters), member 1 [Danio rerio], g...	178.0	[0..80]	[252..1]
COPT1_RAT - High affinity copper uptake protein 1 OS=Rattus norvegicus GN=Slc31a1 PE=2 SV=1	168.0	[0..80]	[252..1]
gi\|47575788, gi\|... - gi\|89273850\|emb\|CAJ83621.1\| solute carrier family 31 (copper transporters), member 1 [Xenopus tropic...	168.0	[0..82]	[252..1]
gi\|57094253 - gi\|57094253\|ref\|XP_538800.1\| PREDICTED: similar to High-affinity copper uptake protein 1 (hCTR1) (Co...	165.0	[0..72]	[252..46]
gi\|109110536 - gi\|109110536\|ref\|XP_001103110.1\| PREDICTED: solute carrier family 31 (copper transporters), member 1...	163.0	[0..82]	[252..1]
COPT1_PONPY - High affinity copper uptake protein 1 - Pongo pygmaeus (Orangutan) COPT1_PONAB - High affinity copper uptake protein 1 OS=Pongo abelii GN=SLC31A1 PE=2 SV=1	163.0	[0..82]	[252..1]
SLC31A1 - solute carrier family 31 (copper transporters), member 1 gi\|114626217 - gi\|114626217\|ref\|XP_520197.2\| PREDICTED: solute carrier family 31 (copper transporters), member 1 is... gi\|123995913, gi... - gi\|123995913\|gb\|ABM85558.1\| solute carrier family 31 (copper transporters), member 1 [synthetic cons...	163.0	[0..82]	[252..1]
gi\|21326753 - gi\|21326753\|emb\|CAD13301.1\| high affinity copper transporter [Podarcis sicula]	163.0	[0..77]	[252..1]
gi\|786136 - gi\|786136\|gb\|AAA99499.1\| polymorphic immunodominant molecule [Theileria parva]	163.0	[0..25]	[262..330]
gi\|28201980, gi\|... - gi\|28201980\|ref\|NP_780299.1\| solute carrier family 31, member 1 [Mus musculus], gi\|26338440\|dbj\|BAC3...	163.0	[0..91]	[252..20]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFSAAKQS LGNSLIKLGT SMAQNSQGPV DDSSLSQLEN LLPPLQILTA RAAMAAMNMS  60
   61 NDTSMSGMNM TNSTTPMSGM NMTNSTTSMS GMNMSNSTTS MSGMNMTNTT TTAKASSCKL 120
  121 SMY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	1kv7A
Description:	multi-copper oxidase CueO
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [124-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WNWYTIDACF ITKHWHITSK HMFVGSIFGI IFMMMALELV RRGQREFDRW CVRRFSPASN  60
   61 SCCHSGAPVH SGPSMALRIF LHFLRSCFYL VQYIVAYIAM LLAMYYNGYV ILFLFCGTFF 120
  121 GYFLFGADTI STKASSSVQT KTIVQVADEK HEHDSSQYSD TTPTTE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	36.443697
Match:	PF04145.6
Description:	No description for PF04145.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits