YRC Public Data Repository - Protein Structure Prediction

Protein:	csn5
Organism:	Schizosaccharomyces pombe
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for csn5.

Description	E-value	Query Range	Subject Range
gi\|54639127, gi\|... - gi\|54639127\|gb\|EAL28529.1\| GA13321 [Drosophila pseudoobscura pseudoobscura], gi\|125776758\|ref\|XP_001... gi\|195152557, gi... - gi\|195152557\|ref\|XP_002017203.1\| GL22178 [Drosophila persimilis], gi\|194112260\|gb\|EDW34303.1\| GL2217... gi\|54639127\|gb\|E... - GA13321-PA [Drosophila pseudoobscura], GA13321 [Drosophila pseudoobscura pseudoobscura]	339.0	[0..3]	[299..20]
CSN5-PA - The gene COP9 complex homolog subunit 5 is referred to in FlyBase by the symbol Dmel\CSN5 (CG14884, ... gi\|194122815, gi... - gi\|195349354\|ref\|XP_002041210.1\| GM15160 [Drosophila sechellia], gi\|194122815\|gb\|EDW44858.1\| GM15160...	337.0	[0..3]	[299..20]
gi\|157114209, gi... - gi\|157114209\|ref\|XP_001657987.1\| jun activation domain binding protein [Aedes aegypti], gi\|157106782...	328.0	[0..3]	[298..21]
gi\|109468228 - gi\|109468228\|ref\|XP_001059730.1\| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit ...	321.0	[0..24]	[298..97]
gi\|118782055, gi... - gi\|118782055\|ref\|XP_312032.3\| ENSANGP00000018752 [Anopheles gambiae str. PEST], gi\|116129389\|gb\|EAA0...	317.0	[0..3]	[298..19]
gi\|91090862 - gi\|91090862\|ref\|XP_972769.1\| PREDICTED: similar to jun activation domain binding protein [Tribolium ...	317.0	[0..3]	[298..28]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNQLENVFR FDEEKERAKI RESPWKHDPE FFRSVKISAV ALLKMLRHVS QGMPLEVMGY  60
   61 VQGKVEGASL IILDSFALPV EGTETRVNAH EEAQEYSVQY HTLCKSVYRH ENVIGWYHSH 120
  121 PNYGCWLSGV DVETQRQNQK YQDPFVAVVL DPKRSLESPY VNIGAFRTYP VGNDGSIRTK 180
  181 SRHHPSVLFK NLPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #2

Region A:
Residues: [195-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKIEDAGAHA EAYYSLPITY FHSKAEKKVT EFLRNRNWSR SITECSILQN NEFLHDSEKL  60
   61 IDHLIHETGN NELPVASAYE QSKACCNELS TFLSQIDVQD KLFKE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits