YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1198.08
Organism:	Schizosaccharomyces pombe
Length:	474 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1198.08.

Description	E-value	Query Range	Subject Range
gi\|45361423, gi\|... - gi\|45361423\|ref\|NP_989289.1\| CNDP dipeptidase 2 [Xenopus (Silurana) tropicalis], gi\|39795553\|gb\|AAH6...	314.0	[0..1]	[473..1]
gi\|73945379, gi\|... - gi\|73945379\|ref\|XP_533372.2\| PREDICTED: similar to Cytosolic nonspecific dipeptidase (Glutamate carb...	311.0	[0..1]	[472..1]
gi\|74220461 - gi\|74220461\|dbj\|BAE31451.1\| unnamed protein product [Mus musculus]	311.0	[0..1]	[472..1]
CNDP2 - CNDP dipeptidase 2 (metallopeptidase M20 family)	311.0	[0..3]	[472..4]
gi\|88178138, gi\|... - gi\|88178138\|gb\|EAQ85606.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11619...	310.0	[0..3]	[474..5]
CNDP2_RAT - Cytosolic non-specific dipeptidase OS=Rattus norvegicus GN=Cndp2 PE=1 SV=1	310.0	[0..1]	[472..1]

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Predicted Domain #1

Region A:
Residues: [1-474]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDKLYEVI DKKKDEFVTR LSRAVSIPSV SADVTLRPKV VEMADFVVSE FTKLGAKMEK  60
   61 RDIGYHQMDG QDVPLPPIVL GQYGNDPSKK TVLIYNHFDV QPASLEDGWS TDPFTLTVDN 120
  121 KGRMFGRGAT DDKGPLIGWI SAIEAHKELG IDFPVNLLMC FEGMEEYGSE GLEDLIRAEA 180
  181 EKYFAKADCV CISDTYWLGT KKPVLTYGLR GVCYFNITVE GPSADLHSGV FGGTVHEPMT 240
  241 DLVAIMSTLV KPNGEILIPG IMDQVAELTP TEDSIYDGID YTMEDLKEAV GADISIYPDP 300
  301 KRTLQHRWRY PTLSLHGIEG AFSGSGAKTV IPAKVIGKFS IRTVPNMESE TVERLVKEHV 360
  361 TKVFNSLNSK NKLAFNNMHS GSWWISSPDH WHYDVGKKAT ERVYGITPDF VREGGSIPVT 420
  421 VTFEQSLKKN VLLLPMGRGD DGAHSINEKL DLDNFLKGIK LFCTYVHELA SVSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.522879
Match:	2pokA
Description:	No description for 2pokA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits