YRC Public Data Repository - Protein Structure Prediction

Protein:	coq6
Organism:	Schizosaccharomyces pombe
Length:	466 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coq6.

Description	E-value	Query Range	Subject Range
gi\|113550311, gi... - gi\|115456479\|ref\|NP_001051840.1\| Os03g0839100 [Oryza sativa (japonica cultivar-group)], gi\|113550311...	244.0	[0..6]	[464..31]
gi\|46105494, gi\|... - gi\|46105494\|ref\|XP_380551.1\| hypothetical protein FG00375.1 [Gibberella zeae PH-1], gi\|42546792\|gb\|E...	243.0	[0..16]	[464..59]
gi\|38109642, gi\|... - gi\|39958776\|ref\|XP_364441.1\| hypothetical protein MG09286.4 [Magnaporthe grisea 70-15], gb\|EAA55479....	242.0	[0..2]	[464..383]
gi\|79416711 - gi\|79416711\|ref\|NP_189062.3\| FAD binding / monooxygenase/ oxidoreductase/ oxidoreductase, acting on ...	239.0	[0..7]	[464..32]
gi\|119115362, gi... - gi\|119115362\|ref\|XP_311042.3\| ENSANGP00000019848 [Anopheles gambiae str. PEST], gi\|116130799\|gb\|EAA0...	239.0	[0..15]	[460..7]
gi\|49645756, gi\|... - gi\|49645756\|emb\|CAG83818.1\| YALI0A09042p [Yarrowia lipolytica], gi\|49168664\|emb\|CAE02706.1\| putative... gi\|49645756, gi\|... - gi\|50543450\|ref\|XP_499891.1\| YALI0A09042p [Yarrowia lipolytica], gi\|49645756\|emb\|CAG83818.1\| unnamed...	235.0	[0..12]	[463..22]

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Predicted Domain #1

Region A:
Residues: [1-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTISPTLGI YTRKFASQKI LQRQFDVVIV GSGPVGLALA AGLQSNPVTQ SLKVGLLDIQ  60
   61 DTMKLKDWKF ETYSNRCSSL TNHTRMFFDK IGAWDFARKD RIQPFQHILA SDGLTNSSIH 120
  121 LDQKPGSEPM AFMSENVNLQ YALLNSIIDK MNNNIKKPNL EFLMPCTITK LSKGENIYRT 180
  181 HIHTTTHGEL TTKLLIGADG RNSIVRKYAN ISMPGWNYLT HAVVGTLKID PLKGPAVAFQ 240
  241 RFLPTGPLAY LPLPDNNATF VWSTRPHIAS KLLRLPEETF VKFLNASFRL DYPDLSYLYQ 300
  301 MDFSEPSKVN EQLDWRLQVK RNSNMQVPPV ITEIVSGSRA AFPLRLAHVD EYVKEGIALC 360
  361 GDAAHNTHPL AGQGLNTGIQ DVESLISALS FAIKHGQDIG SVFSLQPYFR DRYFKNHVYL 420
  421 GVVDKFHKLY AMENPVVTSV RTLGLSLFDR SASLKNFILS TVANGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.522879
Match:	2qa1A
Description:	No description for 2qa1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits