YRC Public Data Repository - Protein Structure Prediction

Protein:	coq4
Organism:	Schizosaccharomyces pombe
Length:	272 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coq4.

Description	E-value	Query Range	Subject Range
gi\|46129366, gi\|... - gi\|46129366\|ref\|XP_389044.1\| hypothetical protein FG08868.1 [Gibberella zeae PH-1], gi\|42549199\|gb\|E...	331.0	[0..22]	[271..295]
COQ4_CANAL - Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Candida albicans (strain SC5314 / ATCC MYA-28... COQ4_CANAL - Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Candida albicans GN=COQ4 PE=3 SV=1	323.0	[0..41]	[271..73]
COQ4_MAGO7 - Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4... COQ4_MAGGR - Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Magnaporthe grisea GN=COQ4 PE=3 SV=1	323.0	[0..16]	[271..12]
gi\|49094866, gi\|... - gi\|67537174\|ref\|XP_662361.1\| hypothetical protein AN4757.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	321.0	[0..31]	[271..54]
COQ4_NEUCR - Ubiquinone biosynthesis protein coq-4, mitochondrial OS=Neurospora crassa GN=coq-4 PE=2 SV=1 COQ4_NEUCR - Ubiquinone biosynthesis protein coq-4, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR...	321.0	[0..20]	[271..31]
gi\|114626918 - gi\|114626918\|ref\|XP_520291.2\| PREDICTED: coenzyme Q4 homolog isoform 2 [Pan troglodytes]	319.0	[0..30]	[269..21]
gi\|4929653, gi\|7... - gi\|7705807\|ref\|NP_057119.1\| coenzyme Q4 homolog [Homo sapiens], gi\|4929653\|gb\|AAD34087.1\|AF151850_1 ...	318.0	[0..30]	[269..21]
COQ4_ASPFC - Ubiquinone biosynthesis protein coq4, mitochondrial OS=Neosartorya fumigata (strain CEA10 / CBS 144.... COQ4_ASPFU - Ubiquinone biosynthesis protein coq4, mitochondrial OS=Aspergillus fumigatus GN=coq4 PE=3 SV=1 COQ4_ASPFU - Ubiquinone biosynthesis protein coq4, mitochondrial OS=Neosartorya fumigata (strain ATCC MYA-4609 / ...	318.0	[0..23]	[271..16]
COQ4_COCIM - Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Coccidioides immitis (strain RS) GN=COQ4 PE=3... COQ4_COCIM - Ubiquinone biosynthesis protein COQ4, mitochondrial OS=Coccidioides immitis GN=COQ4 PE=3 SV=1	317.0	[0..30]	[271..22]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYLNAHLEI NKVVDVVMSL SKKFLKPSVA SNQLRLLFTA AERKVNYPGH VPLSPLQRIF  60
   61 LVAGSAIMGL KAPWRGGDMI SVLGDASG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [89-272]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPFFLHRLLN KMLVDKTGRE ILKDKPRMTS KSLNLPFLRT LPPNTLGKIY VDWIDKEHVG  60
   61 PDTRSPTRFV DDPEEAYVMQ RYRESHDFYH AICNMPTNIE GELAIKWLEF VNMGLPVGAL 120
  121 SALFGPLRLN CEQASRFRRV YIPWSIRNGL NAKTLINVYW EKELTNDIED VRRRIRIEAA 180
  181 PPLV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits